KEGG   Parabacteroides johnsonii: LK449_16470
Entry
LK449_16470       CDS       T07907                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
pjo  Parabacteroides johnsonii
Pathway
pjo03030  DNA replication
pjo03410  Base excision repair
pjo03420  Nucleotide excision repair
pjo03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pjo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LK449_16470 (polA)
   03410 Base excision repair
    LK449_16470 (polA)
   03420 Nucleotide excision repair
    LK449_16470 (polA)
   03440 Homologous recombination
    LK449_16470 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pjo03032]
    LK449_16470 (polA)
   03400 DNA repair and recombination proteins [BR:pjo03400]
    LK449_16470 (polA)
Enzymes [BR:pjo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     LK449_16470 (polA)
DNA replication proteins [BR:pjo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LK449_16470 (polA)
DNA repair and recombination proteins [BR:pjo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     LK449_16470 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LK449_16470 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 DNA_polI_exo1 HHH_2 HHH_5 DNA_pol_lambd_f HHH RNase_H_2
Other DBs
NCBI-ProteinID: UEA90120
LinkDB
Position
3986952..3989774
AA seq 940 aa
MKLFLIDAYALIYRSYYAFIKNPRINSKGMNTSAIFGFINSLEDVLKRENPTHIAVGFDP
KGPTFRHEAYEQYKAQRQETPEDIRKSVPFIKDIIEAYNIPILEVPRYEADDVIGTVAKQ
AEKEGFEVYMMTPDKDYGQLVSEHIFMYRPRFGGDYEIMGIPEVLGKYGLTSVDQVIDLL
GLMGDSSDNIPGCPGVGEKTAQKLLAEFGTIENLLENTDKLKGSLQKKVTENTEQIRFSK
FLATIKTDVPIQFDAAKCIREKVNEERLVEIYTELEFRTFINRMDREPEKAKTESKAAPA
PAKTGTRKKAAPTGPIQGSLFEEFAAEPTTVPKYSTLANLKSTPHTYHLVDTEEKRIELG
RFLSEQDFFAFDTETDGIDPMKAGLVGMSFAVKENEAWYVPVPAAREEADKVLAHFSPAL
QNPKSFKIGQNIKFDILVVRKYGIRIAGPLFDTMIAHYLLNPELRHGMDYLAETYLKYKT
VRIEELIGPKGRKQLCMRDVPIPQVAEYAAEDADITLKLKNYFAPCLDKEGLESLFYDIE
MPLIYVLAEMEYTGVTLDTIALKQSSEELTTALKKLEKEIYELAGIKFNINSARQVGEVL
FDHLKIEEKAKKTKTGSYSTSEEILEKMRSKHPVVEKLLEYRGLKKLLSTYIDALPELIN
PETGKIHTSYNQAVTSTGRLSSTNPNLQNIPVRDELGREIRKAFTAENEDCIFFSADYSQ
IELRIMAHLSQDAHMIEAFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGI
SVFGLAERLNIPRAESKELIEGYFKTYPDIRAYMDESIEVAKEKGYVETIYKRKRFLPDI
NSHNAIVRGYAERNAINAPIQGSAADIIKVAMVRIFNRFETEGLKSKMILQVHDELNFNV
YKDEMEKVKQIVLDEMENAIQLQVPLIADCGEGVNWLEAH
NT seq 2823 nt   +upstreamnt  +downstreamnt
atgaagttattcctcatagatgcttatgcattgatttatcgttcttactacgcttttatc
aagaatccgcgtatcaactccaaaggtatgaacacttcggccatctttggttttatcaac
agcctggaagatgtcctgaaacgtgaaaacccaacccatattgcggtaggcttcgacccg
aaaggtccgactttccgccacgaagcctacgaacaatacaaggcgcaacggcaagagaca
ccggaagatatccgcaagtcagtccctttcatcaaagacatcatagaagcctacaacatc
ccgatactggaagtcccgcgctatgaggccgacgatgtcatcggtacggttgccaagcaa
gccgagaaagaaggtttcgaggtttatatgatgacacccgataaagattatggtcagttg
gtgtccgaacatatattcatgtaccgtcctcgcttcggcggtgattacgagattatggga
atacccgaagttctgggcaaatacggcctgacatccgtcgaccaggtgatcgatctttta
ggactgatgggcgacagttccgataatattcccggatgtccgggtgtcggtgaaaagact
gcccagaaattattggccgaattcggaacaatcgaaaatcttttggaaaacaccgacaag
ctgaaaggttcccttcagaagaaggttacggagaacacagaacaaatccgtttctccaaa
tttctggcaacaatcaagacggatgtcccaatccagttcgatgccgccaaatgcatccgg
gaaaaagtgaacgaagagcgcctcgtagagatttacaccgaattagaatttagaacattt
attaacagaatggacagagaaccggaaaaagccaaaacggagtccaaagcagcaccggca
ccggcaaaaaccggcacaaggaaaaaagcagctccgacaggcccgattcaaggctcgctc
tttgaagaatttgcggccgaacctacgactgttcccaaatattcgactctcgcgaactta
aaatccacccctcatacttatcatcttgttgatacagaggaaaagaggatagaattaggg
cgttttttgagcgaacaggatttttttgcttttgacacggaaacagatggtatagaccca
atgaaggccggattggtcggaatgtcatttgccgtgaaggaaaacgaagcttggtacgtc
cctgttccggcagcccgcgaagaagcagacaaagttcttgcccacttctcccccgccctg
caaaatccgaaatcgttcaagatcggacaaaacataaaattcgatatccttgtcgtccgc
aaatatggaatccggatagccggccctctattcgatacgatgatcgctcattaccttttg
aatcccgaattgcgtcatggcatggactaccttgccgaaacataccttaaatataaaacg
gtacgcatcgaggaactgatcggtccgaaaggtagaaaacaactttgcatgcgcgatgtc
cccattccacaggtagccgaatacgcagccgaggatgcagatatcacgctcaagctgaaa
aactattttgccccctgtctggacaaagaaggactcgaatcgcttttctatgatatcgag
atgcctttaatatatgtattagccgaaatggaatatacgggagtgacgctcgacaccatc
gccttaaagcaatcatccgaagaactgacgaccgcactcaagaagttggaaaaagaaatt
tatgaattggcaggaataaagttcaacatcaattccgcccgccaggtcggcgaagttctt
ttcgatcacctcaagatagaagaaaaagcgaagaagacgaaaactggcagctacagcacg
agtgaagaaatactggagaaaatgcgctccaaacatcccgtcgtagaaaaactgctcgaa
tatcgcggactgaaaaagctactcagcacctatatcgacgcattgcccgaactgatcaac
ccggaaaccggcaagatacacacgtcctacaaccaagcagtcacctcgactggccgcctc
agctcgaccaacccgaatctacagaatattccggtgcgcgacgaattaggacgtgaaatc
cggaaagcctttacagccgaaaatgaagattgtattttcttctccgccgactattcgcag
atcgaactccgtatcatggctcacctcagccaggatgcccatatgatagaagccttccgc
agcggggccgacatccatgccgccacagctgccaaaatatacggcattccggtcgaagaa
gtcacttccgacatgcgccggaaagcgaaaacggccaatttcggcattatctacggaatc
tctgtcttcgggttggccgaacggctgaacatccctcgcgcagaatcgaaagagttgatc
gaaggctacttcaagacttatccagacatccgcgcctacatggacgaaagcatcgaggtg
gcgaaagaaaaaggatatgtagagacgatttacaaacgtaaacgtttcctaccggatatc
aactcccataacgcaatcgtgcggggatatgccgaacgaaacgcgatcaacgctccgatc
cagggcagtgctgccgacatcatcaaggtggccatggtccgcatcttcaaccgtttcgaa
accgagggcctgaaaagcaagatgatcctccaggtacacgatgaattgaactttaacgtc
tacaaagacgaaatggaaaaagtaaaacaaatcgtattggatgaaatggaaaatgcgatc
caactgcaagttcccctgatcgccgactgcggtgaaggggtgaactggctggaagcgcat
taa

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