Parabacteroides johnsonii: LK449_18815
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Entry
LK449_18815 CDS
T07907
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pjo
Parabacteroides johnsonii
Pathway
pjo03030
DNA replication
pjo03430
Mismatch repair
pjo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LK449_18815 (dnaE)
03430 Mismatch repair
LK449_18815 (dnaE)
03440 Homologous recombination
LK449_18815 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pjo03032
]
LK449_18815 (dnaE)
03400 DNA repair and recombination proteins [BR:
pjo03400
]
LK449_18815 (dnaE)
Enzymes [BR:
pjo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LK449_18815 (dnaE)
DNA replication proteins [BR:
pjo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LK449_18815 (dnaE)
DNA repair and recombination proteins [BR:
pjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LK449_18815 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Herpes_UL49_1
Motif
Other DBs
NCBI-ProteinID:
UEA90560
LinkDB
All DBs
Position
complement(4621436..4625236)
Genome browser
AA seq
1266 aa
AA seq
DB search
MEPFIHLHVHTQYSLLDGQASIDALIDKAQKDGMPAIAVTDHGVMFGIKEFFNKVSKKNG
KPLGAIKDYEKELKELKSKTELTSEEQARLEEIPAKIEEEKKKIFKPIFGCECYCARNGR
HSKLASQNDRSGWHLIVLAKNLNGYKNLIKMVSLSWTEGFYGRPRIDKELLEKYHEDLII
CSACIGGEIPQHILNGRMDKAEESVLWFKNLFGEDYYLEIQRHETHDPNAAQDVYPHQVT
ANKVILELARKHDIKVIATNDVHFVNAEDAEAHDRLICLSTGKDLDDPNRMRYTKQEWMK
TTAEMNTLFSDIPEALSNTLEIADKVEFYSIDHGPIMPTFAIPEDFGTEEGYRRKFTEQD
LFDEFTRDENGNVVLSEEAAHDKIKKLGGYEKLYRIKLEADYLKKITYDGAKICYGDELN
DEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAVAYCLGIT
RIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHIITYGTMA
TKSAIKDVARVQKLPLAESNRLAKLVPDKIPDMKKFKLKDAINYVPELKEAATGNDPLAR
DTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQYEGSVIEE
TGLIKMDFLGLKTLSIIKEAIENIRLTTGHELDIDHISLEDPATYKLYCDGKTTGTFQFE
SAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPVMERYLKD
TYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGKTNGYKEE
TLQKIWSDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPSEYMAAVLSRSLSNIVDITK
FMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGEAAVQNIIEERRKNGPY
KDIFDFVERVSLTACNKKNIESLALAGAFDNFGIQREQFFAETGKGEIFLETLVRYGNKF
QTDKSTATNSLFGGDAFIAIAKPEIPKCERWSDLERLNKEKELVGIYLSAHPLDEYRIIL
TYVCNTGMAEINDKENLVGKDLLFGGIVTDFREGMTKKGNPYGIIKIEDFTGSGEIALFG
KDYVDYSKFGKRGMYLLIKARVEDRYNSGRLSLSIGAIQLLQEEKDRLIEKISITVPIHD
LDEPTINELSTLIKNNPGQSLLYFKVVDGEHNIIQNFFSQNIRLNVTRNLVEFLQTNDNM
DFKING
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgtttatacatctgcacgtacatacccagtattcactgctggacggacaagca
tcgatcgacgctttgattgacaaagcacaaaaggatggtatgccggcgattgccgtcacc
gaccacggtgtgatgttcggaataaaagagttcttcaacaaggtatccaagaaaaacggc
aaaccgttaggagctatcaaggattatgagaaagagttgaaagaactgaaaagtaaaacg
gaactgacctccgaagagcaggcccgtcttgaagaaatacctgcaaaaatcgaagaagag
aagaaaaaaatattcaagccgatcttcggttgcgagtgttattgcgcccgtaacggacgg
catagcaagctcgcttcgcagaacgaccgaagcggatggcacttgatcgtgttggctaag
aacctaaacggctacaagaatctgatcaagatggtttctttgtcctggacggaaggtttt
tacggacgtccgcgtatcgacaaggagttgctggaaaaatatcacgaagacctgatcata
tgctccgcctgtatcggtggggaaattccacagcatatcctgaacggacggatggacaag
gccgaagaatcggttctttggttcaagaacctgttcggagaagattactacctggaaata
cagcggcatgaaacacatgatccgaacgccgcacaagatgtataccctcaccaggtaaca
gccaacaaggtgattttggaactggcgcgtaaacacgatatcaaggtaatcgcgaccaat
gacgttcactttgtcaacgcagaagacgcggaagcacatgaccgcctgatctgcctcagt
acgggtaaagacctggacgacccgaaccgtatgcgttacaccaaacaggaatggatgaag
acgacggctgagatgaataccctcttttctgatattcctgaagccctcagcaacacgctg
gagatagccgacaaggtggaattctactccatcgaccacggtcctatcatgccaaccttc
gccatcccggaagatttcggaacggaagaaggatatcgccggaaattcaccgaacaggac
ttgttcgacgaattcacccgtgatgaaaacgggaatgttgtcctgagtgaagaggccgca
cacgacaaaataaagaaattaggcggttacgaaaagctataccgtatcaaactggaagct
gactatctgaaaaagatcacctacgacggagctaaaatttgttacggagatgaactgaac
gacgaagtcaaggagcggttgaacttcgagttgcatatcatgaagacgatgggtttcccc
ggttacttcttgatcgtgcaagactttatccgtgccgctcgcgaagaattgggtgtttcg
gtcggccccggccgtggatcggcagcaggttcggctgttgcctactgcctggggatcacc
cgtatcgacccgatcaaatacgacttgctgttcgagcgtttcctgaatccggaccgaatt
tccctccccgatatcgataccgacttcgacgatgacggtcgtggggaagtgcttcgctgg
gtaacggaaaaatacggagccgaacgtgtggctcatatcatcacgtacggcacgatggca
accaagtcggctatcaaagatgtcgcacgtgtacagaagcttcctcttgccgaatcgaac
cgcctcgcaaaactcgttccggacaagataccggatatgaagaagtttaagctgaaagat
gcgatcaactatgtgccggaactgaaagaggcggctaccggaaacgatccgctggcacgc
gataccttgaaatatgctcaaatgctggaaggtaacgtgcgcaacacaggtgtacatgcc
tgcggcgtcatcatcggacgttacgatatatcggacgtcgtacctgtcagtacagccaag
gacaaagataccggagaagaaatgctcgtcacccaatatgaaggttcggtgatcgaagaa
accggtttgatcaagatggacttcttagggctgaaaacactgtccatcattaaagaagcg
atcgaaaacatccggctgacaacgggccatgaactggatatcgaccatatcagcctggaa
gatccggcaacctacaaactgtattgcgacggaaagactacaggtacattccagtttgaa
tctgccggtatgcaaaagtatctgaaagagttgcagccgtccaagttcgaagacttgatt
gcgatgaacgccctgtaccgtccgggaccaatggattatatcccttctttcatcgcccgc
aaacagggaaaagaggaaatcaagtacgatattcccgtcatggagcggtatctgaaagac
acatatggtatcaccgtctaccaagaacaggtcatgcttttgtcacgtctgttagcgaac
ttcacccgcggcgaaagtgacgccctccgtaaggcaatgggtaagaagttgatcgagaag
atgaaccacctgaaatctaaattcatggcgggtggaaagacgaacggttacaaggaagaa
actttgcagaagatatggtccgactgggaaaaattcgcctcatacgccttcaacaagagt
catgccacctgctactcatgggtagcctatcagacggcttttctgaaagcaaactatccg
tccgagtatatggctgccgtcctgagccgaagtttgtcgaacattgtggatatcacaaaa
ttcatggacgaatgtaaggcaatgggcatccaggttcttggaccggatgtgaacgaatcg
atcctgaagttcagtgtggacaagaacaagaacatccgtttcggcctgggtgccgtgaag
ggtgttggtgaagctgccgtacaaaatatcattgaagaacggagaaagaacggtccgtat
aaagatatctttgatttcgtggaacgtgtcagcctgactgcctgcaacaagaaaaatatc
gaatcgttggcattggccggtgctttcgacaacttcggcattcagcgggaacagttcttt
gccgaaaccggaaaaggagaaatattcctcgaaacgctggtccgctatggcaataagttc
cagacggacaagagcacggcaaccaattccctgttcggaggagatgcttttatcgccatc
gccaaaccggagattcccaaatgtgaacgttggagcgacctcgaacgcctaaataaggaa
aaagaactggtcggcatctatctttccgcccatcctttggatgaataccgtattatactg
acatatgtatgtaataccggcatggcggaaataaacgataaggaaaacctggtgggtaaa
gatttgctgttcggcggtatcgttacggacttccgcgaagggatgaccaagaaagggaat
ccttacggcattatcaagatagaagattttaccggtagcggagaaatagcgttgttcggt
aaagattacgtcgattacagcaaattcggcaaacgcggtatgtacctgctgatcaaggcg
cgtgtggaagaccgctacaattcaggtcgccttagcttatctatcggagccatccagcta
ctacaggaagagaaggaccgtctgatcgaaaagatcagcatcacggtcccgatccacgat
ttggacgaacctaccataaacgaactgtctaccctgattaaaaacaatccgggccagagt
ctgttatacttcaaggtggttgacggtgaacataatatcatacagaattttttctcacaa
aacatacggctcaatgtcacacgcaacctggtcgaattcttgcaaacgaacgataatatg
gattttaaaattaatgggtag
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integrated database retrieval system
