Pseudoxanthomonas japonensis: LAG73_02890
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Entry
LAG73_02890 CDS
T07964
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pjp
Pseudoxanthomonas japonensis
Pathway
pjp02020
Two-component system
pjp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pjp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LAG73_02890
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LAG73_02890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pjp03021
]
LAG73_02890
Transcription machinery [BR:
pjp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LAG73_02890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_AsnC-type
HTH_Crp_2
HTH_Tnp_ISL3
Sigma70_r4
HTH_23
HTH_AraC
HTH_38
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
UBB26052
LinkDB
All DBs
Position
complement(619488..620921)
Genome browser
AA seq
477 aa
AA seq
DB search
MKPRLQTSLGQQLVMTPQLRQAIRLLQMSTAELEVEITQAVESNPLLDWADDAPATGEDG
PPAEAERGSQEEPRHDGDGSSGDDDWAPDEGPWASSGGGSFDDDDPGSAAERIAEADTLR
DHLLWQLHLSHLSPRDRRIGSALIDALEEDGYLREPLSGIAETLKPDLEASEDEISVVLH
QLQRFDPVGVGARNLGECLRLQLLVLSDDTPGKALAMRIADGPLDRLPRSGVAGIATELR
QPLVEVETAVALLRTLDPKPGAQIGELGSDTYVVPDCVVWRQRGVWRAALAGNNLPRIGI
HRGYEQMIRRCGESDAGYLKGQLQEARWLLKSLEARGETLLKVTRCLIREQAGFLEFGEQ
ALRPLTLREVASEVGLHESTVSRAIARKYVRTPRGTLPLRAFFASGIDTEGGGEASSTAI
QAMIRRLIEQENPRKPLSDAKLADLLKASGIPVARRTVAKYREALHILSSHERVRLD
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccacgcctccagacatcgctgggacagcaactggtcatgacgccgcagctgcgt
caggccatccgcttgctgcagatgtcgactgcggagctggaggtggaaatcacccaggcc
gtggaatccaatcccctgctggactgggccgacgacgcccccgccaccggcgaagacggt
ccgccggccgaggccgagcgcggcagccaggaagaaccccgccacgacggggatggaagc
tccggcgatgacgactgggcgccggacgaagggccctgggcctcttccggcggcggttcc
ttcgacgatgacgatcccggcagcgccgccgagcggatcgccgaagccgacaccctgcgc
gaccacctgctctggcagctccacctgtcgcacctgtcgccgcgggatcgccgcatcggc
agcgcgctgattgatgccctggaagaggacggttacctgcgcgaaccgctctccggcatc
gccgaaaccctgaagccggatctggaagccagcgaggacgagatcagcgtggtgctgcac
cagttgcagcgcttcgatccggtcggcgtgggcgcccgcaacctgggcgaatgcctgcgc
ctgcaattgctggtgctcagcgacgacacgcccggcaaggcactggcgatgcgcatcgcc
gacggcccgctggatcggctgccgcgcagcggcgtggccggcatcgccaccgagctcagg
caaccgctggtcgaggtggaaaccgcggtcgccctgctgcgcaccctggatcccaagccc
ggcgcgcagatcggcgagctgggcagcgatacctacgtggtgcccgactgcgtggtctgg
cgccagcgcggcgtctggcgggcggccctggccggcaacaacctgccccggatcggcatc
catcgcggctacgaacagatgatccggcgctgcggcgagagcgacgccggctatctcaag
gggcaactgcaggaagcccgctggctgctcaagagcctggaggcgcgcggcgagaccctg
ctcaaggtcacccgctgcctgatccgtgaacaggccggcttcctggaattcggcgaacag
gcgctacgcccgctgaccctgcgcgaggtcgccagcgaggtcggcctacacgaatccacg
gtttcacgggcgatcgcgcgcaagtacgtgcgtacgccgcgtggaaccttgccgctgcgg
gccttcttcgcctccggcatcgacaccgagggcggcggcgaggcgtccagcaccgccatc
caggccatgatccgccgcctgatcgaacaggaaaatccgcgcaaacccttgtccgacgcc
aagctcgcggacctgttgaaggcctccggcatcccggtggcgcggcgtacggtcgccaaa
taccgtgaagccctgcacatcctttcgtcgcacgaacgcgtgcgcctggactga
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