Pseudoxanthomonas japonensis: LAG73_05230
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Entry
LAG73_05230 CDS
T07964
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pjp
Pseudoxanthomonas japonensis
Pathway
pjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAG73_05230 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pjp03019
]
LAG73_05230 (pnp)
03016 Transfer RNA biogenesis [BR:
pjp03016
]
LAG73_05230 (pnp)
Enzymes [BR:
pjp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LAG73_05230 (pnp)
Messenger RNA biogenesis [BR:
pjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LAG73_05230 (pnp)
Transfer RNA biogenesis [BR:
pjp03016
]
Prokaryotic type
tRNA degradation factors
LAG73_05230 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
S1_2
DUF7680
AATF-Che1
S1CSD-TOTE-1
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
UBB26489
LinkDB
All DBs
Position
1125064..1127172
Genome browser
AA seq
702 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEIARQASGAVIVKMDDTVLLVSAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLN
PEVDGDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTTSELKESQLELVVAG
TANAVLMVESEAAILSEDVMLGAVMFGHREMQKVINAINELTVEAGTKPSEWTAPAKNTA
LISALKEAIGNQLADAFQVRDKLQRRDAIAAIKKDVVERLAGRAEAEGWSGAELSKEFGE
LEYRTMRDSVLATKVRIDGRALDTVRPISSKVSVLPRTHGSSLFTRGETQAIVVATLGTA
RDGQVIDAVSGEYKENFLFHYNFPPFSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLE
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGDNFVVLS
DILGDEDHLGDMDFKVAGTADGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAS
AITSPRAELSDYAPRLLTIKIHPDKIREVIGKGGATIQGITKETGTQIDIQDDGTIVIAS
VNAAAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVSDKLKEGDVVKVKVLEVDKQGRIRLSIKAVEEGEGVPAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcaccctggaaaccggc
gaaatcgcccgccaggccagcggcgccgtcatcgtgaagatggacgacaccgtactgctg
gtctccgccgtcgccgccaagtcggcccgcgaaggccaggacttcttcccgctgacggtc
gactaccaggaaaagttctacgccggcggccgcatcccgggtggcttcttcaagcgcgaa
ggccgtgcgaccgagaaggaaacgttgatctcgcgcctcatcgatcgtccgatccgtccg
ctgttcccggaggattacaagaacgaggtccagatcatcgccacggtgatgtcgctgaac
ccggaagtggatggtgacatcccggcgctgatcggcgcctccgccgcgctggccctggcc
ggcaccccgttcatgggcccgattggcgccgccaaggtcggctacaagaacggcgagtac
atcctcaacccgaccaccagcgagctgaaggaatcgcagctggagctggtcgtcgccggt
accgccaacgcggtgctgatggtcgaatccgaagccgccatcctgtccgaggacgtgatg
ctgggcgcggtgatgttcggccatcgcgagatgcagaaggtcatcaacgcgatcaacgag
ctgaccgtcgaagccggcaccaagccgtccgaatggactgccccggccaagaacaccgcc
ctgatctcggcgctgaaggaagccatcggcaaccagttggccgatgcgttccaggtgcgt
gacaagctgcagcgccgcgacgccatcgccgcgatcaagaaggacgtggtggagcgcctg
gccggtcgcgccgaggccgaaggctggagcggcgccgagctgtcgaaggaattcggcgag
ctggaataccgcaccatgcgcgactccgtgctggccaccaaggtccgcatcgacggccgc
gcgctggacaccgtccgcccaatcagctccaaggtgagcgtgctgccgcgtacccacggc
tcctcgctgttcacccgtggcgagacccaggcgatcgtggtcgccaccctcggcaccgcc
cgtgacggccaggtgatcgacgcggtcagcggcgagtacaaggaaaacttcctgttccac
tacaacttccctccgttctcggtgggcgagtgcggccgtttcggcgcgcccaagcgccgt
gaaatcggccatggtcgcctggccaagcgtggcgtgctggcggtgatgccgaccttggaa
gagtttccgtacaccatccgcgtggtgtcggaaatcaccgaatccaacggttcctcgtcg
atggcctcggtctgcggcagctcgctggcgctgatggatgccggcgtgccggtgaaggca
ccggtcgcgggcatcgcgatgggcctggtgaaggaaggcgacaacttcgtcgtgctgtcg
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtggccggtaccgcc
gacggcgtgtccgcgctgcagatggacatcaagatcgagggcatcaccgaagagatcatg
aagcaggcgctgcagcaggccaaggccggccgtctgcacatcctgggcgagatggcctcg
gccatcaccagcccgcgcgccgagctgagcgactacgccccgcgcctgctgaccatcaag
atccatccggacaagatccgcgaagtgatcggcaagggcggtgccaccatccagggcatc
accaaggaaaccggcacccagatcgatatccaggacgacggcaccatcgtcatcgcctcg
gtcaatgccgccgccgcccaggccgccaaggcccgcatcgagcagatcacctcggacgtc
gagccgggccggatctacgaaggcaaggtcgccaagatcatggatttcggtgcgttcgtc
accatcctgccgggcaaggacggcctggtgcacgtctcgcagatctccagcgagcgcgtg
gagaaggtcagcgacaagctgaaggaaggcgacgtggtcaaggtcaaggtgctggaagtc
gacaagcagggccgcatccgcctgtcgatcaaggccgtcgaggaaggcgaaggcgtgccg
gccgagtaa
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