Pseudoxanthomonas japonensis: LAG73_06400
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Entry
LAG73_06400 CDS
T07964
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pjp
Pseudoxanthomonas japonensis
Pathway
pjp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LAG73_06400 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pjp03400
]
LAG73_06400 (sbcB)
Enzymes [BR:
pjp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LAG73_06400 (sbcB)
DNA repair and recombination proteins [BR:
pjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LAG73_06400 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LAG73_06400 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LAG73_06400 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UBB26705
LinkDB
All DBs
Position
complement(1391899..1393338)
Genome browser
AA seq
479 aa
AA seq
DB search
MSASFLFYDLETFGADPRRTRIAQFAAQRTDAELNPIEDPIDFFVQPADDLLPSPTATLI
TGITPQQAARQGVNEAAAFARIADEMSRPDTCTLGYNSLRFDDEFVRHGLFRNFFDPYER
EWRGGNSRWDLLDVMRLTHALRPDGIVWPQREDGVTSFRLEHLALANDVRQGDAHEALSD
VRATIGMARRMRQAQPRLWEYALKLRDKRFAASLLDTVAMTPVLHISQRYPASRMCAALV
LPLARHPQYDNRVIVYDLDADPDPLLHLAPEAIADRLYTPAADLPPGESRIPLKEIHLNK
APVLVALAHLRDADFERLRIDLLITEANAIRLRAAGPALAEKVRRVFAGEREFAVPDVDA
SLYGGFLGDGDRRRFPDLRATPPELLGQRDFGFRDPRLPELLFRYRARNWPATLTADERL
RWDDYRRRRLIGDSGLSEYGFESFHAEIAALRAAPTTDGPKQALLDQLQAWGRDLEQSL
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgccagcttcctgttctacgatctggagaccttcggcgcggatccgcgccgtacc
cgcatcgcccagttcgccgcccagcgcaccgatgcggagctgaatccgatcgaggatccg
atcgatttcttcgtccagcccgccgacgatctgctgccctcgcccaccgccaccctgatc
accggcatcaccccgcagcaggccgcgcgccagggcgtcaacgaggcggcggcgttcgcc
cgcatcgccgacgagatgtcgcggccggatacctgcacgctgggctacaactcgctgcgc
ttcgatgacgagttcgtccgccacggcctgttccgcaacttcttcgacccctacgagcgc
gaatggcgcggcggaaattcgcgctgggatctgctggacgtgatgcggctgacccacgca
ctgcgcccggacggcatcgtctggccgcagcgcgaggatggcgtcacctcgttccggctg
gaacacctcgcgctggccaacgatgtccgccagggcgatgcgcacgaggcgctgtccgac
gtgcgcgcgaccatcggcatggcccggcggatgcgccaggcgcaaccccgcctgtgggaa
tacgcgctgaaactgcgcgacaagcgcttcgccgccagcctgctggacacggtggcgatg
accccggtcctgcacatctcccagcgctatccggccagccgcatgtgcgcggcgctggtg
ctgccgctggcgcgccatccgcaatacgacaaccgcgtcatcgtgtacgacctggatgcc
gacccggatccgctgctgcacctggcaccggaagccatcgccgatcgcctgtacacgccc
gcggcggatctgccgccgggtgaatcgcgcattccgctgaaggaaatccacctgaacaag
gcaccggtgctggtcgccctggcacacctgcgcgatgccgacttcgaacgcctgcgcatc
gacctgctgatcaccgaggccaatgccatccgcctgcgcgcggccggaccggcgctggcc
gagaaggtgcgccgcgtgttcgccggcgaacgcgagttcgccgtgcccgatgtcgatgcc
tcgctgtatggcggtttccttggcgacggcgaccgccgccggtttcccgatctgcgcgcc
accccgccggaactgctgggccagcgcgacttcggtttccgcgacccgcgcctgccggaa
ctgctgttccgctaccgcgcgcgcaactggccggccaccttgaccgccgacgaacgcctg
cgctgggacgattaccgccgccggcgcctgatcggcgacagtgggctttccgagtacggt
ttcgaaagtttccacgctgaaatcgccgcgctgcgcgcggcccccaccaccgacggcccg
aagcaggccctgctcgaccagttgcaggcctggggccgggatctggagcagagcctgtga
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