Pseudoxanthomonas japonensis: LAG73_08510
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Entry
LAG73_08510 CDS
T07964
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pjp
Pseudoxanthomonas japonensis
Pathway
pjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAG73_08510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pjp03019
]
LAG73_08510
03009 Ribosome biogenesis [BR:
pjp03009
]
LAG73_08510
Enzymes [BR:
pjp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LAG73_08510
Messenger RNA biogenesis [BR:
pjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LAG73_08510
Ribosome biogenesis [BR:
pjp03009
]
Prokaryotic type
rRNA processing factors
LAG73_08510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
DUF4901
Motif
Other DBs
NCBI-ProteinID:
UBB27100
LinkDB
All DBs
Position
1890013..1893183
Genome browser
AA seq
1056 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GADRHGFLPLKEISRDYFQAGVDHNKAGLRELLREGQEVVVQVDKDERGNKGAALTTFIS
LAGRYMVLMPNSPTAGGVSRRIEGDDRAELKRAMDSLAIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQVWKAIAEAALTKPAPFLIYQESRLIVRALRDYLRADIGEILVDTEELHETAR
EFMQQVMPQSLRKLKHYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAI
DVNSARATKGGDIEETAFHTNLEAAEEVARQLRLRDLGGLVVIDFIDMSSNKHQREVENR
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANFLLNEKRGALREIETRHDAPIIIVADEALHTPH
YEVTRIRENELGEESTKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTHVKHSQPAPVREE
REVPAPAPVAPAPAPAPVAAPASGGLFGWLKRLVGAESAPAPAPQPRQQDNRLPRNERND
RGQRRDNRQQQSQGRGGNGQQRREEGRGKGQQNAQQKPRGEQQPKQPGQQQQPKQKQQQQ
PQAPRQQGQQGQGQQQAPKPRGEQAQPAQKPQAAPASKPETASPVAVAPAETEVGKIATV
AAVAATEAPRPQPQPQVQPETIAEQTAEAAAADSVTASEEGAAGDAAQGEGGGRRRRGRR
GGRRRRRGNAEGATLADDQGGDDLSDLGPDEQDAVASRSQPEFDFDDEEPAPAPSRPAGA
NRPTAVAPVTPAETPAPATPVQDKPVADAVAQTAPVAVPTAPVEVVAEARAEVAAVADSG
DARAVIAETVRVEARAGNEIVQAVQQDIATESPAVASATDVTETPAIAPAPNEAASPPVA
ASTEVVAEPASEPVRAELAEPTPAAQPATPSAPPRGTTGSLFFALDADTPPSVTRGLFEP
VATPKPTAPETSAGIAHNDDEDQPVDPDHPENERSA
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgatcaatgcgacgcaggctgaagaactgcgcgtcgcgatcgtggat
ggccagacgctgtacgacatcgatatcgagcaaccgtcgaaagaacagaagaagtccaac
atctacaagggccgcatcacccggctcgaaccttccctcgaagccgccttcgtcgactac
ggtgcagaccggcatggcttcctgccgctgaaggaaatctcccgcgactatttccaggcc
ggggtcgaccacaacaaggccggcctgcgcgaactgctgcgcgagggccaggaagtcgtc
gtccaggtggacaaggatgagcgcggcaacaagggcgccgccctgaccacgttcatctcc
ctggccggccgctacatggtgctgatgcccaactcgcccaccgccggcggcgtgtcgcgc
cgcatcgagggcgatgaccgtgccgagctgaagcgggccatggactcgctggccatcccc
gacgacatgggcgtcatcatccgcaccgccggcgtcggccgcgacgccgaagagctgcag
tgggacctggattacctgctgcaggtctggaaggcgattgccgaggccgcgctgaccaag
ccggcaccgttcctgatctaccaggagtcgcgcctgatcgtgcgcgccctgcgcgactac
ctgcgcgctgacatcggcgaaatcctggtcgacaccgaggaactgcacgagaccgcgcgc
gagttcatgcagcaggtcatgccgcagagcctgcgcaagctcaagcactacaaggacgac
atcccgctgttcaaccgcttccagatcgaatcccagatcgaaggcgcgtatgaacgcaat
gtccgcctgccctccggcggctccatcgtggtcgaccagaccgaggcgctgacggccatc
gacgtcaactcggcgcgcgccaccaagggcggcgacatcgaggagaccgcgttccacacc
aacctggaggcggccgaggaagtggcccgccagctgcgcctgcgcgatctgggcggcctg
gtggtgatcgacttcatcgacatgtcgagcaacaagcaccagcgcgaggtcgagaaccgc
ctgcagaacgcactgaagtacgaccgcgcccgcgtgcagctgggccgcatctcgcgcttc
ggcctgatggaaatgagccgccagcgcctgcgtccgtcgctgggcgaatccagccagatc
gtctgcccccgctgcgacggccacggccgcatgcgcagcgtggagtcgctgtcgctgtcc
atcatccgcgtggccgaagagcacgcgatgaaggagaacaccggacaggtcctggtccag
gcgccggtggaaatcgccaacttcctgctcaacgagaagcgcggcgcgctgcgcgagatc
gagacccgccacgacgcgccgatcatcatcgtcgccgacgaggcgctgcacaccccgcac
tacgaggtcacccgcatccgcgagaacgagctgggcgaggaaagcaccaagcccagctac
cagcgcggcaccccgcgcaagctgcccgtgcatgcgctgaccaaggcgcagctgaacatc
ccggccgccccggcggtgacccacgtgaagcattcgcagcccgccccggtacgcgaggaa
cgcgaggtccctgcgcccgcgccggtcgcccccgcgcctgccccggcaccggtcgccgcg
ccggcttccggtggcctgttcggctggctcaagcgcctggtcggcgccgaaagcgcgccg
gcgcccgcgccgcagccgcgtcagcaggacaaccgcctgccgcgcaacgaacgcaatgat
cgcggccagcgccgtgacaaccgccagcagcagagccagggacgcggcggcaacggccag
cagcgccgcgaggaaggccgcggcaagggccagcagaacgcgcagcagaagccgcgcggc
gagcagcagcccaagcagccggggcagcagcaacagcccaagcagaagcagcaacagcag
ccgcaggctccccgtcagcagggacagcaaggccaaggccagcagcaggcaccgaagccg
cgtggcgaacaggcccagccggcgcagaagccgcaggccgccccggcttcgaagccggaa
accgcttcgccggtcgccgtcgcgcccgccgagaccgaagtgggcaagatcgctaccgtg
gccgcggttgctgcaacggaagcaccgcgtccgcagccgcagccgcaggttcagcctgaa
accatcgccgaacagaccgcggaggcagccgccgcggacagcgtgactgcgtccgaggaa
ggcgcagccggtgatgccgcgcagggcgaaggcggcggacgtcgccgccgtggtcgccgt
ggtggccgccgtcgccgtcgtggcaatgccgagggcgcaacgctggccgacgatcagggc
ggcgacgatctttccgatctgggtccggacgaacaggatgcggtcgccagccgttcgcag
ccggagttcgatttcgacgacgaggaaccggctcccgcgccgtcccgtcccgccggtgcc
aaccgtccaacggccgtcgcgccggtgacgcctgcggaaacgcctgctccggccacgccg
gtgcaggacaagcccgtggcggatgccgtggcacagaccgctcccgtcgccgtcccgacg
gcaccggtcgaagtcgttgccgaggcacgggccgaagtcgccgcggtcgcggacagtggc
gacgcgcgcgccgtcatcgccgaaaccgtgagggtcgaagcccgggccggcaacgagatt
gtccaggcggtccagcaggacatcgcgacggagtctcccgccgttgcgtccgcgacggac
gtgaccgaaaccccggcgatcgcgcccgctccgaacgaagcggcctccccgccggtggcg
gcaagcactgaggtcgtggccgagccggccagtgaaccggtgcgcgccgaacttgccgag
ccgaccccggccgcccagccggcgacgccttccgcgccgccgcgcggcaccaccggatcg
ctgttcttcgcgctggatgcggataccccgccgtcggtgacgcgtggcctgttcgaaccg
gtcgccacgcccaagccgaccgcaccggagacctcggccggcatcgcccacaacgacgat
gaagatcagccggtcgatccggatcatccggagaacgagcgcagcgcctga
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