Pseudoxanthomonas japonensis: LAG73_12055
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Entry
LAG73_12055 CDS
T07964
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pjp
Pseudoxanthomonas japonensis
Pathway
pjp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LAG73_12055 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pjp03400
]
LAG73_12055 (ligD)
Enzymes [BR:
pjp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LAG73_12055 (ligD)
DNA repair and recombination proteins [BR:
pjp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LAG73_12055 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UBB24111
LinkDB
All DBs
Position
complement(2622434..2625019)
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AA seq
861 aa
AA seq
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MSLVEYQRKRHFGRTREPAPGRTGRAARPIFVVQLHHASHRHYDFRLQVGDALKSWAVPK
GPSLDPQVKRLAAEVEDHPIAYADFQGEIPEGEYGAGHVALFDRGLWATRGDPEAQLAKG
HLRFELFGDKLKGGWHLVRTGRASARPQWLLFKDEDDYAAPGEADDMLDDVAAPTAGTRR
GRVVKPGVKARKTASRKAATGTRARVSPRTIEQRRKRALALAGARRARLVDGPFKPQLAM
LGSAPPMGDDWLHEAKWDGYRLLTVIRAGQVRIWSRNALEWTAKVPEIVDALAQLGLQEA
ALDGELIAGAGTQADFSVLQATLSGEKNAPLSYVLFDLLHLEGVDTRRVAQVDRKHLLET
VLKKARPPIAYSPHVQGHGDLAFAAAAERHLEGIISKRADAPYRAGRGDDWRKSKRQESD
EFAVAGMTPPKGSRAGFGSLLLARPDGRGGWRFAGRVGTGFSQATLAELGERLGRRARAT
PTVDIPEGLDTDLRGARWFPPEVVVEVFYRGVGNQGLLRQPSLKGLRPDKTAADLRSSDR
KADMADKANGKAAGGKTGTTGKRGTRRASAADDGIELTHPGRVVYPDTGKTKQDVADYYD
TVMAWLLPEISGRPLSIIRCPQGATRPCFFQKHLAAGMQYVDSVPVEEESGQTEDYLVAR
DARAVRELVQFNALEFHPWGAHADDPDRADRVVFDLDPGADVSWAEIVAAARQMRGLLEE
AGLQSFVRTSGGKGLHVVVPLRPACGWDQVKPFAHAFAESMARMEPLKYVATSSKRLRKG
RIFIDYLRNGRGATSVASFSLRARPGAPVAMPLRWEELGRVKGGNAFDIDSAPARLRRLK
QHPWAGIERIRQNLAGLTRGD
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgagtctggtggagtaccagcgcaagcggcacttcgggcgcacccgcgagccggccccg
gggcgtaccggacgcgcggcgcggccgattttcgtggtccagttgcaccatgccagccat
cgccactacgacttccgcctgcaggtcggcgacgcgctcaagagctgggcggtgccgaag
ggtccaagcctggatccgcaggtcaagcggctggcggcagaggtggaggatcatccgatt
gcctatgcggacttccagggtgagattccggaaggcgaatatggtgcgggccacgtcgcc
ttgttcgatcgcgggctatgggccacccgcggtgatcccgaggcgcagctggcgaagggt
cacctgcgcttcgaactgttcggcgacaagctcaagggcggttggcacctggtgcgcacc
ggacgcgcctcggccaggccgcagtggctgctgttcaaggacgaggacgactacgcggca
cccggtgaggccgacgacatgctggacgacgtggcggcacctaccgcgggtacgcgccgg
gggcgggtggtgaagccaggcgtgaaagcgcgcaagacggcgtcgcgcaaggccgccacc
ggaacacgcgcgcgtgtttccccgcgcaccatcgaacagcggcgcaagcgcgcgctggcg
cttgccggcgcgcgccgcgcgcgcctggtggatggaccgttcaaaccccagttggcgatg
ctgggcagcgcgccgccgatgggcgatgactggctgcacgaggccaagtgggatggctat
cgcctgttgacggtcattcgcgcgggacaggtgcggatctggtcgcgcaatgcgctggag
tggaccgcgaaggtgcccgagatcgtcgatgcgctggcgcagctgggattgcaggaagcc
gcgctggacggcgaactgatcgccggcgccggtacccaggccgacttcagcgtgctgcag
gccacgctctccggcgagaagaacgcaccgctgtcgtacgtgctgttcgatctgcttcat
ctggagggcgtggacacccgccgcgtcgcgcaggtcgatcgcaagcacctgctcgaaacc
gtgctgaaaaaggccaggccgcccatcgcctacagcccgcatgtgcagggacacggcgat
ctggcgttcgccgcggcggccgaacgccacctggaaggcatcatctccaagcgtgcggac
gctccgtatcgggccgggcgtggcgacgactggcgcaagagcaagcgccaggagagcgac
gaattcgcagtggcgggcatgaccccgccgaagggcagccgcgccggcttcggctcgctg
ctgctggcccggcccgacggccgcggcggttggcgcttcgccggacgggtgggtaccggc
ttcagccaggccaccctggccgaactcggggaaaggctgggccggcgtgcgcgcgccacg
cccaccgtcgacatccccgaagggctggacaccgatctgcgcggcgcgcgctggttcccg
ccggaagtggtggtggaagtgttctatcgcggtgtcggcaaccagggattgttgcggcag
ccatcgctgaagggactgcggccggacaagaccgcggcggatctgcgctcatcggaccgg
aaggcggacatggcggacaaggcgaacggcaaggcggcgggtgggaagaccggcacgacg
ggcaagcggggtacccggcgcgcatcggccgcggacgacggcatcgaactgacccatccg
ggccgggtggtctatccggacaccggcaagaccaagcaggacgtggccgattactacgac
acggtgatggcgtggctgttgccggaaatcagcggacggccgctgtcgatcatccgctgt
ccgcagggggcgacgcggccgtgcttcttccagaagcatctggccgccggcatgcagtac
gtggacagcgtgccggtcgaggaggagagtggacagaccgaggattacctggtggcgcgt
gacgcgcgggcggtgcgcgaactggtccagttcaacgcgctggagttccatccgtggggc
gcgcacgcggacgatccggatcgcgcggatcgggtggtgttcgatctcgatcccggcgcc
gacgtatcgtgggctgaaatcgtggccgccgcgcgacagatgcgcggcctgctggaggaa
gcgggcctgcagtcgttcgtacgcacgtccggcggcaaggggctgcacgtggtggtgccg
ctgagaccggcctgcggctgggatcaggtcaagccgttcgcgcacgccttcgccgaatcg
atggcgcggatggagccgctgaagtacgtcgccacttccagcaagcggttgcgcaagggg
cgcatcttcatcgactacctgcgcaacgggcgcggggccaccagcgtggcgtcgttttcg
ttgcgcgcgcgcccgggcgcgccggtggcgatgccgttgcgctgggaagaattgggacgg
gtgaagggcggcaacgccttcgatatcgattcggcgccggcgcggttgcgccggctcaag
cagcacccctgggccggcatcgaacggattcgccagaacctggcgggactgacgcgcggc
gattga
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