KEGG   Pseudoxanthomonas japonensis: LAG73_12055
Entry
LAG73_12055       CDS       T07964                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pjp  Pseudoxanthomonas japonensis
Pathway
pjp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pjp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LAG73_12055 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pjp03400]
    LAG73_12055 (ligD)
Enzymes [BR:pjp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LAG73_12055 (ligD)
DNA repair and recombination proteins [BR:pjp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LAG73_12055 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: UBB24111
LinkDB
Position
complement(2622434..2625019)
AA seq 861 aa
MSLVEYQRKRHFGRTREPAPGRTGRAARPIFVVQLHHASHRHYDFRLQVGDALKSWAVPK
GPSLDPQVKRLAAEVEDHPIAYADFQGEIPEGEYGAGHVALFDRGLWATRGDPEAQLAKG
HLRFELFGDKLKGGWHLVRTGRASARPQWLLFKDEDDYAAPGEADDMLDDVAAPTAGTRR
GRVVKPGVKARKTASRKAATGTRARVSPRTIEQRRKRALALAGARRARLVDGPFKPQLAM
LGSAPPMGDDWLHEAKWDGYRLLTVIRAGQVRIWSRNALEWTAKVPEIVDALAQLGLQEA
ALDGELIAGAGTQADFSVLQATLSGEKNAPLSYVLFDLLHLEGVDTRRVAQVDRKHLLET
VLKKARPPIAYSPHVQGHGDLAFAAAAERHLEGIISKRADAPYRAGRGDDWRKSKRQESD
EFAVAGMTPPKGSRAGFGSLLLARPDGRGGWRFAGRVGTGFSQATLAELGERLGRRARAT
PTVDIPEGLDTDLRGARWFPPEVVVEVFYRGVGNQGLLRQPSLKGLRPDKTAADLRSSDR
KADMADKANGKAAGGKTGTTGKRGTRRASAADDGIELTHPGRVVYPDTGKTKQDVADYYD
TVMAWLLPEISGRPLSIIRCPQGATRPCFFQKHLAAGMQYVDSVPVEEESGQTEDYLVAR
DARAVRELVQFNALEFHPWGAHADDPDRADRVVFDLDPGADVSWAEIVAAARQMRGLLEE
AGLQSFVRTSGGKGLHVVVPLRPACGWDQVKPFAHAFAESMARMEPLKYVATSSKRLRKG
RIFIDYLRNGRGATSVASFSLRARPGAPVAMPLRWEELGRVKGGNAFDIDSAPARLRRLK
QHPWAGIERIRQNLAGLTRGD
NT seq 2586 nt   +upstreamnt  +downstreamnt
atgagtctggtggagtaccagcgcaagcggcacttcgggcgcacccgcgagccggccccg
gggcgtaccggacgcgcggcgcggccgattttcgtggtccagttgcaccatgccagccat
cgccactacgacttccgcctgcaggtcggcgacgcgctcaagagctgggcggtgccgaag
ggtccaagcctggatccgcaggtcaagcggctggcggcagaggtggaggatcatccgatt
gcctatgcggacttccagggtgagattccggaaggcgaatatggtgcgggccacgtcgcc
ttgttcgatcgcgggctatgggccacccgcggtgatcccgaggcgcagctggcgaagggt
cacctgcgcttcgaactgttcggcgacaagctcaagggcggttggcacctggtgcgcacc
ggacgcgcctcggccaggccgcagtggctgctgttcaaggacgaggacgactacgcggca
cccggtgaggccgacgacatgctggacgacgtggcggcacctaccgcgggtacgcgccgg
gggcgggtggtgaagccaggcgtgaaagcgcgcaagacggcgtcgcgcaaggccgccacc
ggaacacgcgcgcgtgtttccccgcgcaccatcgaacagcggcgcaagcgcgcgctggcg
cttgccggcgcgcgccgcgcgcgcctggtggatggaccgttcaaaccccagttggcgatg
ctgggcagcgcgccgccgatgggcgatgactggctgcacgaggccaagtgggatggctat
cgcctgttgacggtcattcgcgcgggacaggtgcggatctggtcgcgcaatgcgctggag
tggaccgcgaaggtgcccgagatcgtcgatgcgctggcgcagctgggattgcaggaagcc
gcgctggacggcgaactgatcgccggcgccggtacccaggccgacttcagcgtgctgcag
gccacgctctccggcgagaagaacgcaccgctgtcgtacgtgctgttcgatctgcttcat
ctggagggcgtggacacccgccgcgtcgcgcaggtcgatcgcaagcacctgctcgaaacc
gtgctgaaaaaggccaggccgcccatcgcctacagcccgcatgtgcagggacacggcgat
ctggcgttcgccgcggcggccgaacgccacctggaaggcatcatctccaagcgtgcggac
gctccgtatcgggccgggcgtggcgacgactggcgcaagagcaagcgccaggagagcgac
gaattcgcagtggcgggcatgaccccgccgaagggcagccgcgccggcttcggctcgctg
ctgctggcccggcccgacggccgcggcggttggcgcttcgccggacgggtgggtaccggc
ttcagccaggccaccctggccgaactcggggaaaggctgggccggcgtgcgcgcgccacg
cccaccgtcgacatccccgaagggctggacaccgatctgcgcggcgcgcgctggttcccg
ccggaagtggtggtggaagtgttctatcgcggtgtcggcaaccagggattgttgcggcag
ccatcgctgaagggactgcggccggacaagaccgcggcggatctgcgctcatcggaccgg
aaggcggacatggcggacaaggcgaacggcaaggcggcgggtgggaagaccggcacgacg
ggcaagcggggtacccggcgcgcatcggccgcggacgacggcatcgaactgacccatccg
ggccgggtggtctatccggacaccggcaagaccaagcaggacgtggccgattactacgac
acggtgatggcgtggctgttgccggaaatcagcggacggccgctgtcgatcatccgctgt
ccgcagggggcgacgcggccgtgcttcttccagaagcatctggccgccggcatgcagtac
gtggacagcgtgccggtcgaggaggagagtggacagaccgaggattacctggtggcgcgt
gacgcgcgggcggtgcgcgaactggtccagttcaacgcgctggagttccatccgtggggc
gcgcacgcggacgatccggatcgcgcggatcgggtggtgttcgatctcgatcccggcgcc
gacgtatcgtgggctgaaatcgtggccgccgcgcgacagatgcgcggcctgctggaggaa
gcgggcctgcagtcgttcgtacgcacgtccggcggcaaggggctgcacgtggtggtgccg
ctgagaccggcctgcggctgggatcaggtcaagccgttcgcgcacgccttcgccgaatcg
atggcgcggatggagccgctgaagtacgtcgccacttccagcaagcggttgcgcaagggg
cgcatcttcatcgactacctgcgcaacgggcgcggggccaccagcgtggcgtcgttttcg
ttgcgcgcgcgcccgggcgcgccggtggcgatgccgttgcgctgggaagaattgggacgg
gtgaagggcggcaacgccttcgatatcgattcggcgccggcgcggttgcgccggctcaag
cagcacccctgggccggcatcgaacggattcgccagaacctggcgggactgacgcgcggc
gattga

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