Pseudoxanthomonas japonensis: LAG73_12650
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Entry
LAG73_12650 CDS
T07964
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pjp
Pseudoxanthomonas japonensis
Pathway
pjp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pjp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LAG73_12650 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pjp03021
]
LAG73_12650 (rpoB)
03400 DNA repair and recombination proteins [BR:
pjp03400
]
LAG73_12650 (rpoB)
Enzymes [BR:
pjp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LAG73_12650 (rpoB)
Transcription machinery [BR:
pjp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LAG73_12650 (rpoB)
DNA repair and recombination proteins [BR:
pjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LAG73_12650 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
UBB24224
LinkDB
All DBs
Position
complement(2746931..2751082)
Genome browser
AA seq
1383 aa
AA seq
DB search
MTTYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEFTEPSKREDRGLHAALKS
VFPISSYSGNAALEYVGYKLGEPVFDERECRNRGLSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVTILLRALGYSNEEMLNEFFDINTFHILPE
GVQLELVSERLRGETLNFDLADGDKVIVEAGKRITARHVKQLEQSGISALAVPDEYLVGR
ILSHDVIDGNTGELLANANDEITEEQLVKFRKAGVDAVGTLWVNDLDRGPYLSNTLRIDP
SRTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSNVGRMKFNRRVGRKEVT
GEAVLYDKKYFGSRTDEEAKRLVAELGDTSDILDVIKVLTEIRNGRGTVDDIDHLGNRRV
RSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQ
FMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLIN
SLAVYARTNNYGFLETPYRKVVDGTITDEIEYLSAIEENEYVIAQANALHDAKGHLTEQF
VPCRYQGESLLKPPSEVDYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPTL
RAQKPLVGTGIERAVARDSGVTVNARRGGVVEQIDAARIVVKVNESEISGEHDAGVDIYT
LIKYTRSNQNTCINQRPLVNVGDVVARGDVLADGPSTDIGELALGQNMLIAFMPWNGYNF
EDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVVY
IGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDVQ
VFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILESAIYARLRSQLVGKVANGGPGLKK
GDTVNDAYLDGLKKADWFAIRMKDDDASDAIERAQKQIQAHEKEFERRFADKRGKITAGD
DLAPGVLKMVKVYLAVKRRIQPGDKMAGRHGNKGVVSTIVPVEDMPYMATGETVDIVLNP
LGVPSRMNIGQVLEVHLGWAAKGLGRKIQAMLEAQAKVADLRKFLDQIYNHEKKLGEDRV
DLSQFSDEELINLARNLTDGVPMATPVFDGAAEAEIKHMLELADLPISGQTQLFDGRTGE
AFDRHTTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAAHTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINMEL
EDN
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgacgacatactcgttcaccgagaagaagcgcatccgcaaggacttcggcaaacagcgt
tcgatcctcgaagtccccttcctgcttgccatccaggtcgactcctaccgcgaattcctg
caggaattcaccgagccgtccaagcgcgaggatcgcggcctgcacgccgccctcaaatcg
gtgttcccgatctccagctacagcggcaatgccgcgctggaatacgttggctacaagctg
ggcgaaccggtgttcgacgagcgcgagtgccgcaaccgtggcttgagctacggcgccccg
ctgcgcgtcaccgtgcgcctggtcatctatgaccgcgaatcgtccaccaaggcgatcaag
tacgtgaaggagcaggaggtctatctgggcgaaatcccgctgatgaccgagaacggcacc
ttcatcgtcaacggcaccgagcgcgtcatcgtttcccagctgcaccgctcgccgggcgtg
ttcttcgaccacgaccgcggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcatcccttaccgcggctcctggctggacttcgagttcgatcccaaggacgcgctgttc
acccgtatcgatcgtcgccgcaagctgccggtgaccatcctgctgcgcgcgctgggctac
tccaacgaggagatgctcaacgagttcttcgacatcaacactttccacatcctgcccgaa
ggcgtgcagctggaactggtgtccgagcgcctgcgtggtgaaaccctcaacttcgacctg
gctgacggcgacaaggtcatcgtcgaagccggcaagcgcatcaccgcgcgccacgtgaag
cagctggagcagtccggcatctccgcgctggcggtgcccgacgagtacctggtcggccgc
atcctgtcgcacgacgtgatcgacggcaacaccggcgaactgctggccaacgccaacgac
gagatcaccgaagagcaactggtcaagttccgcaaggccggcgtcgacgcggtcggcacc
ctgtgggtgaacgatctggatcgtggtccgtacctgtccaacaccctgcgcattgatccg
agccgcacccagctggaagcgctggtcgaaatctaccggatgatgcgtccgggcgagccg
ccgaccaaggacgccgcgcagaacctgttccacaacctgttcttcaccttcgagcgctac
gacctgtccaacgtcggccggatgaagttcaaccgccgtgtcggccgcaaggaagtcacc
ggcgaggccgtgctgtacgacaagaagtacttcggttcgcgcaccgacgaagaggccaag
cgcctggtcgccgagttgggcgacacctcggacatcctggacgtgatcaaggtcctgacc
gagatccgcaatggccgcggcaccgtcgatgacatcgaccacctgggcaaccgccgcgtg
cgttcggtcggtgaaatggccgagaacgtgttccgcgtgggcctggtccgcgtcgagcgc
gcggtcaaggagcgcctgtcgatggccgagtccgagggcctgaccccgcaggagctgatc
aacgccaagccggtggccgccgcgatcaaggagttcttcggctcctcgcagctgtcccag
ttcatggatcagaacaacccgctgtcggaagtgacccacaagcgccgcgtctcggcgctg
ggcccgggcggtctgacccgcgagcgcgccggcttcgaagtgcgcgacgtgcacccgacc
cactacggccgcgtctgcaccatcgagactccggaaggcccgaacatcggcctgatcaac
tcgctggccgtgtacgcccgcaccaacaattacggcttcctggaaaccccgtaccgcaag
gtcgtggacggtaccatcaccgacgagatcgagtacctgtcggcgatcgaggaaaacgag
tacgtcatcgcccaggccaatgcgctgcatgacgccaagggccacctgaccgagcagttc
gtgccgtgccgctaccagggcgagtcgctgctgaagccgccgagcgaagtggactacatg
gacgtctcgccgatgcagaccgtgtcggtcgccgcggcgctggtgccgttcctggagcac
gacgacgccaaccgcgcgctgatgggcgccaacatgcagcgccaggccgtgccgacgctg
cgtgcgcagaagccgctggtcggtaccggcatcgagcgcgccgtggcgcgcgactcgggc
gtgaccgtcaacgcgcgtcgcggtggcgtggtcgagcagatcgacgcggcccgcatcgtg
gtcaaggtcaacgagagcgagatctccggcgagcacgatgccggcgtggatatctacacg
ctgatcaagtacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtgaac
gtgggcgacgtggtggcgcgcggcgacgtgctggccgacggtccctcgaccgacatcggc
gaactggccctgggccagaacatgctgatcgcgttcatgccgtggaacggctacaacttc
gaagactccatcctgctctccgagcgcgtggtggaagaggatcgctacaccacgatccac
atcgaagagctgacctgcgtcgcgcgcgacaccaagctgggtccggaggaaatctcggcc
gacatcccgaacgtctccgagcaggcgctgaaccgcctggacgagagcggcgtggtgtac
atcggcgccgaagtgcgcgccggcgacatcatggtcggcaaggtcaccccgaaaggcgag
agccagctgactccggaagagaagctgctgcgcgcgatcttcggcgagaaggcgtccgac
gttaaggacagctcgctgcgcgtgccgcccggcatggacggcaccgtcatcgacgtgcag
gtcttcacccgcgacggcatcgagaaggacaagcgcgcgcgccagatcgaggaaagcgag
atcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctggaaagcgccatctat
gcccgcctgcgttcgcagctggtcggcaaggtcgccaacggtggtccgggcctgaagaag
ggcgacaccgtcaatgacgcctacctggacggcctgaagaaggccgactggttcgccatc
cgcatgaaggacgacgacgcctccgacgccatcgaacgcgcccagaagcagatccaggcg
cacgagaaggagttcgagcgccgcttcgccgacaagcgcggcaagatcaccgccggcgac
gacctcgccccgggtgtgctgaagatggtcaaggtctacctggccgtgaagcgccgcatc
cagccgggcgacaagatggccggccgtcacggcaacaagggcgtggtgtcgaccatcgtg
ccggtcgaggacatgccgtacatggccaccggcgaaaccgtggacatcgtgctgaatccg
ctgggcgtgccgtcgcgtatgaacatcggccaggtgctggaagtccacctgggctgggcc
gccaagggactgggccggaagatccaggccatgctggaagcccaggccaaggtcgccgac
ctgcgcaagttcctggaccagatctacaaccacgaaaagaagctgggcgaagatcgcgtc
gacctgtcgcagttcagtgacgaggaactgatcaacctcgcgcgcaacctgaccgacggc
gtgccgatggccaccccggtgttcgacggcgcggcggaagcggaaatcaagcacatgctg
gaactggcggatctgccgatcagcggccagacccagctgttcgatggccgcaccggcgaa
gcgttcgatcgccacaccacggtcggctacatgcacatgctgaagctgaaccacctggtg
gacgacaagatgcacgcccgctcgaccggcccgtactcgctggtcacccagcagccgctg
ggcggcaaggcgcagttcggcggccagcgtttcggcgaaatggaagtctgggcgctggaa
gcctacggcgcggcgcacaccctgcaggaaatgctgacggtcaagtcggacgacgtgcag
ggccgcaaccagatgtacaagaacattgtcgacggcgaacacgagatggtcgcgggcatg
ccggaatccttcaacgtgctggtgaaggaaatccgctccctggccatcaacatggaactg
gaagacaactga
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integrated database retrieval system
