Pseudoxanthomonas japonensis: LAG73_15220
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Entry
LAG73_15220 CDS
T07964
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pjp
Pseudoxanthomonas japonensis
Pathway
pjp00300
Lysine biosynthesis
pjp00470
D-Amino acid metabolism
pjp01100
Metabolic pathways
pjp01110
Biosynthesis of secondary metabolites
pjp01120
Microbial metabolism in diverse environments
pjp01230
Biosynthesis of amino acids
Module
pjp_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pjp00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
LAG73_15220 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
LAG73_15220 (dapF)
Enzymes [BR:
pjp01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
LAG73_15220 (dapF)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
CntK_N
Motif
Other DBs
NCBI-ProteinID:
UBB27461
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All DBs
Position
complement(3288902..3289735)
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AA seq
277 aa
AA seq
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MISFTKMHGAGNDFVVLDLRGDIPPPGPELAARLADRHFGVGCDQILTIEPPRSADAVAS
YRIWNSDGSTSQQCGNGARCVAAWLVRDGVASGERFRVDSPLTTHDVEHLGGDRYAIAMG
VPQFVPARIPLAGFEQVLDEYDVRLDEDLRLRFGAVSMGNPHAVVEVPSVADAPVLKVGP
ALQQSTWFPESVNVGFAEVVARDRIRLRVYERGVGETLACGSGACAAAVVLMKRGRIDRA
ATVSLPGGDLHIQWPADDAEVVMSGPTAFVFEGEWNA
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgatttccttcaccaagatgcacggcgcgggcaacgacttcgtcgtgctcgatctgcgc
ggcgacatcccgcctccggggcccgaactggcagcccgcctggccgaccgccacttcggc
gtcggctgcgaccagatcctgaccatcgagccgccgcgcagcgccgacgcggtggcgtcc
taccggatctggaattcggacggctccacctcgcagcagtgcggcaacggcgcgcgctgc
gtggcggcctggctggtgcgcgacggtgtcgccagcggcgaacgcttccgggtcgacagt
ccgctgaccacgcatgacgtggaacacctgggcggcgatcgttatgccatcgccatgggc
gtgccgcagttcgtgccggcgcggattccgctcgccgggttcgaacaggtgctggacgag
tacgacgtgcggttggacgaggacctgcggctgcgtttcggcgcggtgtcgatgggcaac
ccgcatgcggtcgtcgaggtgccctcggtagccgacgcgccggtgctgaaggtcggccct
gccttgcagcagtcgacgtggtttccggaatcggtcaacgtcggtttcgccgaggtggtc
gcgcgtgaccgcatccgcctgcgcgtctacgagcgcggcgtcggcgagaccctggcctgc
ggcagcggcgcctgcgccgcggcggtggtgctgatgaagcgtggtcgcatcgatcgcgcc
gcgacggtatcgctgccgggcggcgatctgcacatccaatggccggcggacgatgccgaa
gtggtgatgtccggcccgaccgcattcgtattcgaaggggaatggaacgcatga
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