Pseudoxanthomonas japonensis: LAG73_16035
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Entry
LAG73_16035 CDS
T07964
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pjp
Pseudoxanthomonas japonensis
Pathway
pjp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pjp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LAG73_16035 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pjp03021
]
LAG73_16035 (rpoD)
Transcription machinery [BR:
pjp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LAG73_16035 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SH3-A_UBE2O
DEC-1_C
TetR_C_6
Motif
Other DBs
NCBI-ProteinID:
UBB24840
LinkDB
All DBs
Position
complement(3515589..3517445)
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AA seq
618 aa
AA seq
DB search
MANERPAQQSEIKLLISKGLEQGYLTYAEVNDHLPDDLVDPEQIEDIIGMINGMGIDVHE
VAPDAETLLLSDGNTGGREVDETAAEEAAAALTSLDTEGGRTTDPVRMYMREMGTVELLT
REGEIAIAKRIEEGLGQVQASLGNFPWSIELLLEEYELHKTGKKRLAEVVVGFNDVEEPA
EEVPEAVEASDSDADSDDEDEDGGDDAAEEAAPTGPDPEEVARRMQALADGYAKFKKAHA
KSGPDNKAVTKIRTEMAEVFVTLKLPLALTDTLVRKLRDVVNEIKDHERRVMHLSANIAK
MPRKDFLRAWEGNQTNLGWVDEVLKRKQKWSSGLREVKDQIIAEQEATIAVEQAMHLPLA
EIKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQYGR
EATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIDNTT
NINLQETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEQLRSFLDID
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcctgcccaacaatctgaaatcaagctgctgatcagcaagggtctt
gagcagggctacctgacctacgccgaagtcaacgatcacctgccggacgacctggtcgac
ccggaacagatcgaagacatcatcggcatgatcaacggcatgggcatcgacgtccatgaa
gtcgcccccgatgccgaaaccctgctgctgtccgacggcaacaccggcggtcgcgaagtc
gacgagaccgcggccgaggaagccgccgccgcgctgacctcgctcgacaccgaaggtggc
cgcaccaccgacccggtgcgcatgtacatgcgcgaaatgggcaccgtcgagctgctgacc
cgcgaaggcgaaatcgccatcgccaagcgcatcgaggaaggcctgggccaggtccaggct
tcgctcggcaacttcccgtggtcgatcgaactgctgctggaagagtacgaactgcacaag
accggcaagaagcgcctggccgaagtcgtggtcggcttcaacgacgtcgaggaaccggcg
gaagaagtgccggaagccgtcgaagcctccgacagcgacgccgacagcgacgacgaagac
gaggatggcggtgacgacgcggccgaagaggcggcgcccaccggtccggatccggaagaa
gtcgcccgccgcatgcaggcgctggccgacggctacgccaagttcaagaaggcgcacgcc
aagagcggcccggacaacaaggccgtcaccaagatccgcaccgagatggccgaggtcttc
gtcaccctcaagctgccgctcgccctgaccgacaccctggtccgcaagctgcgcgacgtg
gtcaacgagatcaaggaccacgagcgccgcgtgatgcacctgtcggccaacatcgccaag
atgccgcgcaaggacttcctgcgcgcctgggaaggcaaccagaccaacctgggctgggtg
gacgaagtcctcaagcgcaagcagaagtggtcttccggcctgcgcgaggtcaaggaccag
atcatcgccgagcaggaagccaccatcgccgtcgaacaggcgatgcacctgccgctggcc
gagatcaaggaaatcagccgcgccatggcctacggcgaagccaaggcccgcaaggccaag
aaggagatggtcgaggccaacctgcgcctggtgatctccatcgccaagaagtacacgaac
cgcggcctgcagttcctcgacctcatccaggaaggcaacatcggcctgatgaaggccgtg
gacaagttcgaataccgccgcggctacaagttctcgacctacgccacctggtggatccgc
caggcgatcacccgctcgatcgccgaccaggcgcgcaccatccgtatcccggtgcacatg
atcgagacgatcaacaagctcaatcgcatttcccgccagatgctccagcagtacggccgc
gaggccaccccggaggagctggccaaggaaatggacatgcccgaggacaagatccgcaag
gtcatgaagatcgccaaggagccgatctccatggaaaccccgatcggcgacgacgaggat
tcccacctgggcgacttcatcgaggacaccaacgtggagtccccgatcgacaacaccacc
aacatcaacctgcaggaaaccgtccgcgacgtgctggccggcctcaccccgcgggaagcc
aaggtgctgcgcatgcgcttcggcatcgacatgaacaccgatcacaccctggaagaagtg
ggcaagcagttcgacgtcacccgcgagcgcatccgccagatagaagccaaggccctgcgc
aaactgcgccaccccagccgctccgagcagctgcgcagcttcctggacatcgactga
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