Pseudoxanthomonas japonensis: LAG73_16620
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Entry
LAG73_16620 CDS
T07964
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pjp
Pseudoxanthomonas japonensis
Pathway
pjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAG73_16620 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pjp03019
]
LAG73_16620 (rhlB)
Enzymes [BR:
pjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LAG73_16620 (rhlB)
Messenger RNA biogenesis [BR:
pjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LAG73_16620 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RhlB
Helicase_C
ResIII
baeRF_family2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UBB24935
LinkDB
All DBs
Position
complement(3643271..3644968)
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AA seq
565 aa
AA seq
DB search
MSDKPLTDITFTSFDLHPALLAGLENAGFSRCTPIQALTLPVALAGRDVAGQAQTGTGKT
LAFLVAVMNRLLSRPALAERKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEVCVLDEADRMFDLGFIKDI
RFLLRRMPIRTERQTLLFSATLSHRVLELAYEHMNEPEKLVVEAETVTAARVRQRMYFPA
DEEKIPLLLGLLSRSEGARTMVFVNTKAFVERVARALERAGYRVGVLSGDVPQKKRETLL
NRFQKGQLEILVATDVAARGLHIDGVSHVYNYDLPFDAEDYVHRIGRTARLGAEGDAISF
ACERYAMSLPDIEAYIEQKIPVEAVSAELLTALPRPERAPVEGGEGEEGESIGQIFREAR
EQRSAEEQRRGGGGRRSGSGSGGGGGGGRGRGERREGGQGERKPRSPRPPRADNPAATPA
PAERPPRPEGERAPHPERAEGERGPRKRRRRRHGRPVENADAGIAASTSAPAAGKPAANA
PVAGKHDKPSFFSRLGRKLKSLVGG
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaacctttaaccgacattacttttacctcgttcgacctgcatccggccctc
ctggccgggttggagaacgccggtttttcacgctgcacccccattcaggcgctgaccctg
ccggtggcgctggccggacgcgatgtcgccggccaggcccagaccggcaccggcaagacc
ctggcgttcctggtggcggtgatgaatcgcctgctgtcgcggccggccctggccgagcgc
aagccggaagacccgcgcgcgctgatcctggcgccgacccgcgagctggccatccagatc
cacaaggacgcggtgaagttcggcgccgacctgggcctgcgcttcgcgctggtgtacggc
ggcgtggactacgacaagcagcgtgagctgctgcagcagggcgtggacgtgatcatcgcc
acccccggccgcctgatcgactacgtcaagcagcacaaggtcgtctccctgcacgcctgc
gaggtctgcgtgctggacgaggccgaccgcatgttcgacctgggcttcatcaaggacatc
cggttcctgctgcggcggatgccgatccgcaccgagcgccagaccctgctgttcagcgcc
accctcagccatcgcgtgctggagctggcctacgagcacatgaacgagcccgagaagctg
gtggtggaggccgagacggtcaccgccgcgcgggtgcgccagcgcatgtacttcccggcc
gacgaggagaagatcccgctgctgctgggcctgctgtcgcgcagcgagggcgcgcgcacc
atggtgttcgtcaacaccaaggcgttcgtcgagcgggtcgcgcgcgcgctggagcgcgcc
ggctaccgggtcggcgtgctgtccggcgacgttccgcagaagaagcgcgagaccttgctc
aaccgcttccagaagggccagctggaaatcctggtcgccaccgacgtggccgcgcgcggc
ctgcacatcgacggcgtctcgcacgtctacaactacgacctgccgttcgatgccgaggac
tatgtccaccgcatcggccgcaccgcccgcctgggcgcggaaggcgacgcgatcagcttc
gcctgcgagcgctacgcgatgtctctgcccgatatcgaggcgtacatcgagcagaagatt
ccggtcgaagcggtctccgccgaactgctgaccgcgctgccgcgtcccgaacgcgcgccg
gtggaaggcggcgagggcgaggaaggcgagagcatcggccagatcttccgcgaggcgcgc
gaacagcgcagcgccgaggaacagcgccgtggcggtggtggccgccgcagcggtagcggc
agtggcggtggcggtggcggtggtcgtggccggggtgaacgccgcgaaggcgggcagggc
gaacgcaagccgcgcagcccgcgtccgccgcgtgcggacaacccggccgccacgccggca
cccgccgagcgcccgccgcgtcccgagggtgagcgcgccccgcatccggagcgcgccgag
ggcgaacgcggtccgcgcaagcgccgccgccgccgtcatggccgtccggtggagaacgcc
gacgccggcatcgccgcgtccacgtccgcgcctgccgctggcaagcccgccgcgaacgcg
cccgtcgccggcaagcacgacaagccgtcgttcttcagccgcctgggccgcaagttgaag
tcgctggtcggcggctga
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