Pseudoxanthomonas japonensis: LAG73_19520
Help
Entry
LAG73_19520 CDS
T07964
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pjp
Pseudoxanthomonas japonensis
Brite
KEGG Orthology (KO) [BR:
pjp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pjp03016
]
LAG73_19520
Enzymes [BR:
pjp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LAG73_19520
Transfer RNA biogenesis [BR:
pjp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LAG73_19520
Prokaryotic type
tRNA splicing ligases
LAG73_19520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Gam
Motif
Other DBs
NCBI-ProteinID:
UBB25480
LinkDB
All DBs
Position
complement(4290452..4291672)
Genome browser
AA seq
406 aa
AA seq
DB search
MNTSNFELLHAEGSTTPIKGWVRGVPLEAEAHAQLRNIASIPFVGPWVAVMPDVHLGKGA
TVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRASDLPDSLAQLRNSIERSVPVGNGRGG
EHHRLPDSIAGRVAESGLAQRLDVIKQKHRRIRTDKLDSQLGTLGGGNHFIEICLDEADA
VWVMLHSGSRGTGNLIGTYFIERAREALAHRVLGFHLPDKDLAFFMQGEPLFDDYVEAVS
WAQDYARHNREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHGGQELLVTRKGAV
SVREGELGIIPGSMGTRSYIVRGKGNTDSFHSCSHGAGRVMSRTAARQRITLAQHREATA
HVECRKDEGVIDESPAAYKSIDAVMAAQTDLVEVVHTLRQVVCIKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaacacttcaaactttgaattgctgcatgccgagggcagcaccacgccgatcaagggc
tgggtgcgcggcgtgccgctggaagccgaggcgcatgcgcaattgcgcaacatcgcatcc
atcccgttcgtcgggccgtgggtggcggtgatgccggacgtgcacctgggcaagggcgcg
accgtgggttcggtcatcccgacccgcggggcaatcatcccggcggcggtcggcgtggac
atcggctgcggcatggccgcggtgcggaccacgctgcgcgccagcgatctgcccgacagc
ctggcgcagttgcgcaattccatcgagcgcagcgtgccggtcggcaatgggcgtggcggc
gaacaccaccgcctgccggacagcatcgccggccgtgtggcggaatcaggcctggcccag
cgcctggacgtgatcaagcagaagcaccgcaggatccgcaccgacaagctcgacagccag
ttgggcacgctgggtggcggcaaccacttcatcgaaatctgcctcgacgaggccgatgcg
gtgtgggtgatgctgcacagcggctcgcgtggcaccggcaacctcattggcacctacttc
atcgagcgtgcccgcgaggcgctggcgcaccgcgtactcgggttccatctgccggacaag
gatcttgccttcttcatgcaaggcgagccgctgttcgatgactacgtggaagcggtgtcg
tgggcgcaggactacgcgcgccacaaccgcgaggcgatgatggcgcgggtgctggcggaa
atgcgccaccgcctgccgaagttccagttggagaagctggcggtgaactgccaccacaac
tatgtgcagaaggaaacgcatggcgggcaggaactgctggtgacccgaaagggcgccgtc
agcgtgcgtgaaggcgagctgggcatcatcccgggcagcatgggcacgcgcagctacatc
gtgcgtggcaagggcaacacggacagtttccacagctgcagccacggtgccggtcgtgtc
atgagccgtaccgccgcgcgtcagcggatcacgctggcgcaacaccgcgaggcgaccgcg
cacgtcgagtgccgtaaggacgagggcgtcatcgacgaatcgccggccgcctacaagtcc
atcgacgcggtgatggccgcgcagaccgatttggtcgaggtggtccacaccttgcgccag
gtggtctgcatcaaggggtga
DBGET
integrated database retrieval system
