Pseudomonas juntendi: L1P09_05545
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Entry
L1P09_05545 CDS
T08267
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pju
Pseudomonas juntendi
Brite
KEGG Orthology (KO) [BR:
pju00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pju03009
]
L1P09_05545 (rlmD)
Enzymes [BR:
pju01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
L1P09_05545 (rlmD)
Ribosome biogenesis [BR:
pju03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
L1P09_05545 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltransf_31
Cons_hypoth95
MTS
Methyltransf_11
Methyltransf_23
Methyltr_RsmB-F
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_15
PCMT
Methyltransf_4
Ubie_methyltran
TPMT
PrmA
DREV
Motif
Other DBs
NCBI-ProteinID:
UJM13653
LinkDB
All DBs
Position
1216356..1217714
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AA seq
452 aa
AA seq
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MTKKKTNSGLRFQPAGGSRSPQVPVGKKQRLDIERLAGDGRGIAFHEGRTWFVSGALAGE
AVEARVLNARGKVVEARLERVLQASPERREAPCRHYSRCGGCTLQHLPHEAQLALKQRTL
AEQLQRVAGVQPDAWAPPLSGPAFGYRRRARVAVRWDVKARQLQVGFRAEASQDIIAIDD
CPVLVQPLQSILRHLPTVLRSLEKPQALGHVELFSGSAEALLVRHVAPLPAQDLARLQAF
CEQANAQLWLQGEGEPAPVEPAAPLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALA
WLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANARNNNVHNARFFQ
ADLSQPLAGTGWAAEGFSAVLLDPPRDGAYEVVQGIARLKASRLVYVSCNPATLARDAQV
LAGQGYRLTRAGILDMFPQTAHVEAMALFEAG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagaaaaaaaccaacagcggcctgcgcttccagccggccggcggtagccgcagc
ccccaggtccccgtgggcaagaagcagcgcctggacatcgagcgcctggccggcgacggc
cgcggcattgccttccatgaagggcgtacctggttcgtcagtggcgccctggccggtgag
gccgtggaagcgcgggtgctcaatgcacgcggcaaggtggtcgaggcccgcctggagcgt
gtgctgcaggccagccccgagcgccgtgaagcgccctgtcggcactatagccgctgtggt
ggctgcaccctgcagcacctgccgcacgaggcgcaactggcgttgaagcagcggaccttg
gccgaacaactgcaacgggtggccggtgtgcagcccgacgcctgggcgccgccgctcagc
gggccggcgttcggctaccggcgccgtgctcgcgtggcagtgcgctgggacgtcaaggcg
cgccagctgcaggtcggcttccgtgccgaagccagccaggacatcatcgccatcgacgat
tgcccggtgctggtacagcccttgcagtcgattctgcgccacctgccgaccgtgctgcgt
tcgctggaaaaaccgcaggccctgggccatgtggagctgttcagcggctctgccgaagcg
ctgctggtccgccatgtggcgccattgccggcgcaggacctggcccggttgcaggcgttc
tgcgagcaggccaacgcgcagttatggctgcaaggcgaaggtgaaccggcgcccgtcgaa
cctgcggcgccattgggctttgccctggcgccgtggcagcttgagctggcctggcgccct
ggcgacttcgtgcaggtcaacgcccaggtcaatacggcgatgatcgagcaggcgctggcc
tggcttgcgccgcaggccgatgagcgggtgctcgacctgttctgcggcctgggcaacttc
gccctgccgctggcacgccaggcgcgtgaagtggtggcagtggaaggtgtgcaagccatg
gtcgatcgggccgcggccaacgccagaaacaacaatgtgcataacgcacggttttttcag
gccgatttatcgcagccattggccggcaccggatgggccgccgagggcttttctgcggta
ctcttggacccaccgcgcgacggtgcttacgaggtggtgcaaggcatcgcccgcctcaag
gccagcaggctggtctatgtatcgtgcaacccggccacactggcgcgagacgcccaggtg
ctggccggccaggggtaccggttaacacgggccgggattctcgacatgtttcctcaaacg
gcgcatgtcgaggccatggcgttattcgaagcgggctag
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