Pseudomonas juntendi: L1P09_07895
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Entry
L1P09_07895 CDS
T08267
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pju
Pseudomonas juntendi
Brite
KEGG Orthology (KO) [BR:
pju00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pju03032
]
L1P09_07895 (topA)
03400 DNA repair and recombination proteins [BR:
pju03400
]
L1P09_07895 (topA)
Enzymes [BR:
pju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
L1P09_07895 (topA)
DNA replication proteins [BR:
pju03032
]
Prokaryotic type
DNA Topoisomerases
L1P09_07895 (topA)
DNA repair and recombination proteins [BR:
pju03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
L1P09_07895 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UJM14098
LinkDB
All DBs
Position
1721849..1724458
Genome browser
AA seq
869 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA
PALSPKEKARRQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR
EGEAIAWHLREAIGGDDARYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV
VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKV
RFEVARENGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAAS
NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPDAPLV
YGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVT
VAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMVQGEALKLLQIDPSQHFTKPP
ARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESF
SNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESSEDGMRANQPTMTN
IPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESRVLL
GKHRCPICATAMDAYLLDEKHKLHICGNNPDCAGYEIEEGNYRIKGYEGPSLECDKCGSE
MQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDDTYVLRDGAS
GLFLAASQFPKNRETRAPLVMEIVPHKHEIDPKYHFLCDAPQKDPDGRPAVIRYSRKTKE
QYVQSEVDGKPTGWKAFYDGGAWKVEDKR
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggccaaggccaagaccatcaacaagtac
ctgggcaaccagtacgtggtgaagtcgagtatcggccatatccgagacctccccaccagc
ggttcggccagcgcaagcaaagagccggccgccaagcgtggtaaggctgcgggtgaggcc
ccggcgctttcacccaaggaaaaggcccgtcgccagctggtgtcgcgcatgggtgtcgac
cccgaccacggctggaaagccaagtacgagatcctgcctggcaaggaaaaggtgatcgaa
gagctgcgccgcctggccaaggatgccgacaccatctatctcgcaaccgacttggaccgc
gaaggggaagccattgcctggcacctgcgcgaggccatcggtggtgacgacgcccgctac
aagcgcgtggtgttcaacgaaattaccaagaaggcgattcaggaagccttctcgcaaccg
ggcgagctggacatcgaccgggtcaacgcgcagcaggctcggcgtttccttgaccgtgtg
gtgggctacatggtgtcgccgctgttgtgggccaagattgcccgtggcttgtctgccggt
cgcgtgcagtcggtagcggtcaagctggtggtagagcgcgagcgtgaaattcgcgcgttc
atcccggaagaatactgggaaatccacgccgacctcggcaccgcgaaaaacgccaaggtg
cgtttcgaagtggcgcgcgaaaatggcgaggcgttcaagccgctgaacgaagcccaggcc
atggccgcgctggagaagctcaaggcttccagctacagcgtggtcaagcgcgaagaccgc
ccgaccagcagcaagccgtcggcgccgttcattacctccaccctgcagcaggccgccagc
aaccgcctgggctttggtgtgaagaagaccatgatgatggcccagcgcttgtacgaagct
ggctacatcacgtacatgcgtaccgactcgaccaacctgtcggccgatgccctggacatg
gcccgcagctacatcgagcgtgagttcggcaagcagtacctgccggatgcaccgctggtc
tacggcagcaaagaaggcgcccaggaagcgcacgaagcgattcgcccgtcggacgtgaat
acacacccgaccaagctcagtggcatggagcgcgacgccgagcgcctgtacgagctgatc
tggcgccagttcctggcttgccagatgccgccggcgcagtacctgtctaccagtgtcacc
gtggctgccggcgatttcgagctgcgcgccaagggccgtatcctgaagttcgacggttat
acccgtgtgctgccacagcagagcaaaccgggtgaagacgacgtactgccggaaatggtc
cagggcgaagcgctgaagttgctgcagatcgacccgagccagcacttcaccaagccgccg
gcacgcttcaccgaagccagcctggtaaaggaaatggaaaagcgcggcatcggtcgcccg
tcgacctacgcggcgatcatttccaccatccaggatcgtggttatgtgaccctgcacaac
cgccgcttctactccgagaaaatgggcgacatcgtcaccgagcgcctgtcggaaagcttc
tccaacctgatggactacggctttaccgccgacatggaagagaacctcgacgacgtggcc
cagggcgagcgtgactggaagaacgtgctcgacgagttctatggcgacttcagcaagaag
ctgcagacggccgagtcgagcgaagacggcatgcgcgccaaccagccgaccatgaccaac
attccgtgcaaggaatgtggccggccaatgatgattcgtaccgcttccactggggtattc
cttggctgctctggctacagcctgccgccgaaagaacgctgcaaggcgaccgtcaacctg
gtgcccggcgatgagatcgctgcggacgacgagggcgagtccgagtcgcgggtgctgttg
ggcaagcaccgttgcccgatctgtgccacggcgatggatgcctacttgctggatgagaag
cacaagctgcacatctgcggtaacaacccggactgcgctggctacgaaatcgaagaaggc
aactaccgcatcaagggttacgaagggccaagcctggaatgcgacaagtgcggtagcgag
atgcaactgaagaccggccggttcggcaagttcttcggctgcaccaacccggcttgcaag
aacacccgcaaactgctgaaaagcggtgaggcagcgccaccgaagatggacaaggtggac
atgcctgagctcaagtgcgagaaggtggacgacacctacgtactgcgcgatggcgcctcg
gggttgttcctggcggccagccagttccccaagaaccgcgaaacccgggcaccactggtc
atggaaatcgtgccgcacaagcacgagatcgacccgaagtaccacttcctgtgcgatgcg
ccgcagaaggacccggacggccgccctgcggtgatccgctacagccgcaagaccaaggag
cagtacgtgcagtccgaggtcgatggcaagcctaccggctggaaggcgttctacgacggt
ggcgcgtggaaggtagaagacaagcgctga
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