Pseudomonas juntendi: L1P09_18225
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Entry
L1P09_18225 CDS
T08267
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pju
Pseudomonas juntendi
Brite
KEGG Orthology (KO) [BR:
pju00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pju03016
]
L1P09_18225 (rnd)
Enzymes [BR:
pju01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
L1P09_18225 (rnd)
Transfer RNA biogenesis [BR:
pju03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
L1P09_18225 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
UJM11263
LinkDB
All DBs
Position
complement(3917342..3918475)
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AA seq
377 aa
AA seq
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MAIEIHWICDDQSLAEHCRDWQQLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPL
LIGNWQPLAELLENSGVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGFSMGY
SRLVQEVLGIDLPKGETRSDWLQRPLSDTQVSYAAEDAVHLAELFTVLRPRLSDDKYAWV
LEDGAELVAALRREVEPATLYRDVKLAWKLAPQQLAVLRELCAWRERTARSRDVPRNRVL
KEHSLWPIAKNQPSNLSALAKVEEMHPRTIRQDGEFLIQLIKRAASLPAEQWPAPLPEPL
PIEASGILKQLRAIGQAEGERLGIAPELMLRKKALEALLKSGYPNGPYQLPDSLRGWRRE
RMGQALLDSLAGAGETR
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgaaattcactggatatgtgacgaccagagcctggctgaacactgccgcgac
tggcagcaactgccgtttgtcgccgtcgataccgagttcatgcgggtcgacaccttttac
ccgaaggccgggctgatccagattggcgacggccaacgggccttcctgatcgacccgctg
ctgatcggcaactggcaacccctggccgagctgctggaaaacagtggtgtggtcaaggtg
ctgcatgcctgcagcgaagacctcgaagtgctgttgcgcctgaccggcaagttgccacaa
ccgttgttcgacacccagctggccgccggttacctgaaccttggcttttccatgggctac
tcgcgcctggtgcaggaagtgctgggcatcgacctgcccaagggcgaaacccgctccgac
tggctgcagcgcccgctgtcggacacccaggtcagctacgcggccgaagatgccgtgcac
ctggccgagctgtttaccgtgctgcgcccgcgccttagcgacgacaaatacgcctgggtg
ctggaggatggcgccgagctggtcgccgccttgcgtcgcgaagtcgagccagccaccttg
taccgcgacgtcaagctggcctggaagctggcgccccagcagttggccgtgctgcgtgag
ctgtgcgcctggcgcgagcgtactgcccgcagccgcgatgtaccccgcaaccgcgtgctc
aaggaacactcgctgtggcccattgccaagaaccagccgagcaacctgtcggcactggcc
aaggttgaagagatgcacccgcgcaccattcgtcaggacggtgagtttcttatccagctg
atcaagcgcgccgccagcctgcctgccgagcagtggccagcgcccttgcccgaaccgctg
ccgatcgaagccagcggcatcctcaagcagctgcgcgccatcggccaggccgaaggcgag
cgcctgggcattgcccctgagctgatgctgcgtaaaaaagccctggaggcactgctcaag
agcggttaccccaatggcccttatcaattgcccgattcgctgcgcggctggcgccgtgag
cgtatgggccaggccctgctggacagccttgcaggcgccggagagacccgatga
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