Pseudomonas juntendi: L1P09_18495
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Entry
L1P09_18495 CDS
T08267
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pju
Pseudomonas juntendi
Pathway
pju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L1P09_18495 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pju03019
]
L1P09_18495 (rne)
03009 Ribosome biogenesis [BR:
pju03009
]
L1P09_18495 (rne)
Enzymes [BR:
pju01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
L1P09_18495 (rne)
Messenger RNA biogenesis [BR:
pju03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L1P09_18495 (rne)
Ribosome biogenesis [BR:
pju03009
]
Prokaryotic type
rRNA processing factors
L1P09_18495 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UJM11304
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All DBs
Position
3972290..3975541
Genome browser
AA seq
1083 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKTPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPEVLNNQSSYEIAASETEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAA
EVQQPAPAAAAAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVAPAAEKPAAERSPRNEE
RRNGRQQSRNRNGRRDEERKPREERAERAPREERQPREERAAREERAPREERAPREERAP
REERAPREERAPRQPREDRRGNRGEERVRELREPLDATPPAEREERQPREERVAREERAP
REERAPREERAPREERAPREERAPREERAPREERAPREERAPRPPREERQPRAAEEAAEQ
AAELAEEQLPNEEQLQDEQEGTDGERPRRRSRGQRRRSNRRERQRNANGELIDGEEEGSD
EQPQQHQATELGAELAAGLAVTAAVATSNISSDAEAQANQQAERANADVVAAAATDNSEA
AQPVEQAEKLEQVEVVTKVEEVAVAPVVEQPVSEPVAVVEATAEPVVEVAPQPVVEEAPV
VEPAVAVEAPVEAPAVEAGEIEQAPTVVEAAPAVEQPAPVAEAQPEVVAEPAPVVVEPAP
VAAPAVVEPATVMLANGRAPNDPREVRRRKREAEAAAKAAQEAAAATGEPALETADEQKP
HHG
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgtagccctggtggac
ggccaacgtctctacgacctggacatcgagtccggcgcgcgtgagcagaaaaaggccaac
atctacaaaggcaagatcacccgcatcgaacccagcctcgaagccgctttcgtcgacttc
ggttccgaacgtcacggcttcctgccgctgaaagaaatctcccgcgaatacttcaagaaa
accccggaaggccgggtgaacatcaaggaagtgctcagcgaaggccaggaagtcatcgtt
caggtcgagaaggaagagcgtggcaacaaaggtgccgccctcaccaccttcatcagcctg
gccggccgctacctggtactgatgcccaacaacccgcgcgccggtggcatctcgcgccgc
atcgaaggcgaagagcgcaacgaactgcgcgaagccctgaacggcctgaccgtaccgggc
gacatgggcctgatcgtgcgcaccgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctggactacctgctgcaactgtggaccgccatcaaggaagcgtccctggaccgcgcc
gcgccgttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtattgatcgacagcatcgacgcccaggaagaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaaggtcaagctctacgaagacagcgtg
ccgctgttcaaccgcttccagatcgaaagccagatcgaaaccgccttccagcgcgtggtc
gacctgccgtccggtggctcgatcgtgatcgacccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtcgaagagcgcgtg
cgtgagtgcctggaagccgaccgcgcccgcgtgcaggttggccgcatctcccgctttggc
ctgctggaaatgtcccgtcagcgcctgcgcccatcgctgggtgaaagcagcggcatcgtc
tgcccacgttgctccggcaccggcatcatccgtgacgtcgagtcgctgtcgctggccatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtgcgtgcccaggtg
ccaatcccggtagcagcgttcctgctcaacgaaaagcgtaattccatcaccaagatcgag
ctgcgcacccgtgcgcgcatcatcatcctgccgaacgatcacctggaaaccccgcacttc
gaagtccagcgcctgcgcgacgacaacccggaagtgctgaacaaccagtccagctacgaa
atcgccgccagcgaaaccgaagaagcaccacaaccgactgctacccgtaccctggttcgc
caggaagcggccgtgaaaaccgccccggcccgcgccaatgcaccggtaccggccgccgcc
gaagtgcagcagcctgcaccggccgccgccgccgcgccgagcgcgccggagccaagcctg
ttcaagggcctggtcaagtcgctggtcagcctgttcgccggcaaggacgagcctgccgct
gccccggtcgcccctgccgccgagaaaccggccgccgagcgcagcccacgcaacgaagaa
cgccgcaacggccgtcagcaaagccgcaaccgcaatggccgccgcgacgaagagcgtaaa
ccacgtgaagagcgtgccgaacgcgcaccacgcgaagagcgtcagccacgcgaggaacgc
gctgcgcgtgaagaacgtgcgccacgcgaagagcgcgccccgcgtgaagaacgtgcgcca
cgtgaagagcgcgcaccacgcgaggaacgcgccccacgccagccacgcgaagaccgccgt
ggcaaccgtggcgaagagcgcgtgcgcgaactgcgcgagccgctggatgccactccgcca
gccgagcgtgaagagcggcagccgcgtgaagagcgcgtagcccgtgaagagcgtgcaccg
cgtgaagaacgcgccccgcgtgaagagcgtgctccgcgcgaagaacgtgctccacgtgaa
gaacgtgccccgcgcgaagaacgtgccccgcgcgaagaacgtgctccgcgtgaagagcgt
gccccacgcccaccccgtgaagagcgtcagccacgcgctgccgaagaagcggccgaacag
gctgccgagctggccgaagagcaactgccgaacgaagaacagctgcaagacgagcaggaa
ggcacggatggcgagcgtccgcgccgccgctcgcgtggccagcgtcgccgcagcaaccgt
cgtgaacgtcagcgcaatgccaatggcgagctgatcgacggcgaagaagaaggcagcgac
gagcagccacagcagcaccaggccaccgagctgggtgctgaactggcggcgggcctggcc
gtgactgccgctgtcgcgaccagcaacatcagcagcgatgccgaggcccaggccaaccaa
caggccgagcgcgccaacgctgacgtcgttgccgctgcagcaaccgacaacagcgaagcc
gcccagccggttgagcaggctgaaaagctcgagcaagtcgaagttgtcaccaaggttgaa
gaagtggccgtggccccagtggtcgagcagccggtcagcgagcctgtggccgtggtcgag
gcaactgccgagccagtggtcgaagtcgcgccacaaccggtcgtcgaagaagcgcctgtt
gtcgagccggccgtggctgtcgaagctccggtagaagcgccagctgtcgaagccggtgaa
atcgagcaagcgccgaccgtggtcgaggctgcgccggctgtcgaacagcctgccccggtt
gccgaagcccagccagaagtagtggccgagcctgcacctgtggttgtcgagcctgcgccg
gtcgcggccccagctgtggtagagcctgccactgtcatgctggccaacggccgcgcgccg
aacgacccgcgtgaagtgcgccgccgcaaacgtgaggccgaggctgccgccaaagccgcg
caggaagctgctgcagccactggcgagccagccctggaaaccgccgatgagcaaaagcct
catcatggttga
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