Pseudomonas juntendi: L1P09_21965
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Entry
L1P09_21965 CDS
T08267
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pju
Pseudomonas juntendi
Pathway
pju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L1P09_21965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pju03019
]
L1P09_21965
Enzymes [BR:
pju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L1P09_21965
Messenger RNA biogenesis [BR:
pju03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L1P09_21965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UJM11936
LinkDB
All DBs
Position
complement(4740902..4742233)
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AA seq
443 aa
AA seq
DB search
MNFAQLGLIEPLLRTLQQLAYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL
QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR
LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR
QTLLFSATFSEQIRLLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKEDLFCHLMR
KQRWKQVLVFAKTRNGVDQLVARLLAEGVNADGIHGDRPQATRQRALDSFKAREIQVLVA
TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIE
VLTRQTLPRHEEPDFIPDHRVPMTDASGQVIKKPKKPKKPKENSAKRGLGRWMDSTEGGN
AEPAVKAVRKVPSFNGGPRKRKP
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgcccaactcggcctgatcgaaccgctgctgcgcaccttgcagcagctggcc
tacaccacccccacaccggtgcaggccaaggccattcccgccgtgctggccggccgcgac
ctgatggccgcggcccagaccggcaccggaaaaacggcaggctttgccctgccggtactg
cagcgcctggccctggaaggcgagaaagtggccagcaactcgatccgtgccctggtgctg
gtgccgacccgagagctggccgagcaggtgcacaacaacgtgcgcgagtacgccgagaac
ctgccgttgagcacctatgcggtgtacggcggggtcagcatcaacccgcagatgatgcgc
ctgcgccgtggcgtcgacctgctggtcgccacccctggccgcctgctcgacctgttccgg
cagaacgcggtcaagttcaaccaggtgcagaccctggtgctggacgaagccgaccgcatg
ctcgacctgggctttgccgaagagctgcaatcggtctatgccgcgttgccacgcaagcgc
cagactttgctgttttccgccacgttctccgagcagatccgcctgctggcagggctggcc
ctgaatgacccgctgagtatcgaagtcagcccacgcaatgccactgccgccagcgtcaag
cagtggctggtacctgtggataaaaagcgcaaggaagacctgttctgccacctgatgcgc
aagcagcgctggaagcaggtgctggtgttcgccaagacccgcaatggcgtcgaccagttg
gtggcgcgcttgctggccgagggtgtgaatgccgatggtatccacggtgaccgcccgcag
gcgacccgccagcgcgcactggacagcttcaaggcccgggaaatccaggtgctggtggcc
accgatgtggctgcccgtggcctggatatcgacgatttgccgctggtggtcaacctggac
ctgcccatcgttgccgaggactacgtgcaccgtatcggccgcaccgggcgggcgggcaac
aagggggaggcgatttcgctggtgtgcgccgatgaagtgcagctgctggcggcgattgag
gtgctgacccgccagaccctgccgcgtcatgaagaaccggacttcattccggatcaccgg
gtgccgatgaccgacgccagtggccaggtgatcaagaagccgaagaagcccaaaaagccg
aaagagaacagcgccaagcgtggcttggggcgctggatggacagcaccgaggggggcaat
gccgagcctgcagtgaaggcggtgcgcaaggtacctagcttcaatggcgggccgcgcaag
cgtaaaccttag
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