Pseudomonas juntendi: L1P09_23065
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Entry
L1P09_23065 CDS
T08267
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pju
Pseudomonas juntendi
Pathway
pju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L1P09_23065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pju03019
]
L1P09_23065
Enzymes [BR:
pju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L1P09_23065
Messenger RNA biogenesis [BR:
pju03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L1P09_23065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UJM12142
LinkDB
All DBs
Position
4982775..4984667
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AA seq
630 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN
PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKL
LKSIERVTRQRIPDGDLMGFDASQVEAEKPEVRERPQNNGRGGRNQQARGEGGKDANGGR
KDKGKDKGKAKQQTAEKPADKEKSGDRQQQPRKPRDKKPRQQQQASSSPSVPKVPADRDP
EEFLDDEIDNFGNRADYVSPYEGKSQGRNRRPGGGQGQGQGNGQRSNTGGQGQARSGGQQ
RSGGSSGEKRPPRANNRGGARRDGGAGRGRPARDDAARQEPAVRNPRQAEKQPVIIRKES
KLDRFPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctcttgtccgcgctatcgaagctgcgggc
tatacccagccgacccccgtgcaacagcgggccattcccgccgtgttgcaaggccgcgac
ctgatggttgccgcccagactggtactggtaagaccggcggctttgccctgccgattctc
gagcgcctgttcccggccggccaccccgacaagtcgcagcgccatggcccgcgccaaccc
cgcgtgctggtactgaccccgacccgcgaactggccgcccaggtgcatgacagcttcaag
gtgtatgcccgcgacttgcccctggtcagcgcctgcatcttcggcggcgtaggcatgaac
cctcagatccaggccatcgccaagggtgtcgacgtactggtcgcctgccctggccgcctg
ctcgacctggccggccaaggcaaggtagacctggcccacgttgaaatactcgtcctggac
gaagccgaccgcatgctcgacatgggctttatccacgacgtgaagaaggtacttgcccgc
ttgccggccaagcgccagaacctgctgttctcggccaccttctccaaagacatcaccgac
ctcgccgacaagctcctgcacaacccggagcgcatcgaagtcaccccgccgaacaccacc
gtggagcgtatcgagcaacgcgtgtatcgcctgccggccagccacaagcgtgccctgctg
gcgcacctgatcaccctcggtgcgtgggaacaggtgctggtgttcacccgaaccaagcac
ggtgccaaccgcctggccgagtacctggaaaagcacggcctgaccgccgccgccatccat
ggcaacaagagccagaacgctcgtaccaaggcgctggccgacttcaaggccaacagcgtc
cgggtactggtcgccaccgacatcgccgcccgcggcctggacatcgaccaactgccacac
gtggtcaacttcgagctgccgaacgtcgaggaagactacgtgcaccgcattggccgtact
ggccgcgccggccgttcgggcgaggccatttccatggtcgccccggatgaagaaaaacta
ctcaagagcatcgagcgcgtcactcgccagcgcattcccgatggcgacctgatgggcttc
gacgccagccaggtagaagccgaaaaacccgaagtacgcgagcgcccgcagaacaacggc
cgcggtggccgtaaccagcaggcccgcggcgaaggtggcaaagacgccaacggcggccgc
aaggacaagggcaaggacaaaggcaaggccaagcagcaaacagctgaaaagcccgccgac
aaggaaaagagcggcgacaggcaacagcagccgcgcaagccgcgtgacaagaagccgcgc
cagcagcaacaagccagcagcagccccagcgtgccgaaggttccggccgaccgtgacccg
gaagagttcctggacgacgagatcgacaacttcggaaaccgcgctgactacgtcagcccc
tacgagggcaagagccagggccgcaatcgtcgcccgggtggcggtcagggccagggccaa
ggcaatggtcagcgcagcaacactggtggtcagggccaagcccgtagcggcggccagcag
cgcagcggcggtagcagcggcgaaaaacgcccgccgcgcgccaacaaccgaggcggtgcc
cgtcgtgatggcggcgctggccgtggtcgcccggcccgtgacgatgctgcccggcaggag
ccagccgtgcgcaacccgcgccaggcggaaaaacagccggtgatcatccgcaaggaatcc
aagctcgaccgtttccctacgcctgagcagctggatgacttgccaagccgcccccgcggt
gagcgcccggcgctgctgacccgcaagggctaa
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