Paenibacillus kyungheensis: PQ456_00175
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Entry
PQ456_00175 CDS
T08956
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pka
Paenibacillus kyungheensis
Pathway
pka03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PQ456_00175 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pka03400
]
PQ456_00175 (mfd)
Enzymes [BR:
pka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PQ456_00175 (mfd)
DNA repair and recombination proteins [BR:
pka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PQ456_00175 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF1366
Motif
Other DBs
NCBI-ProteinID:
WCT55995
UniProt:
A0AAX3M236
LinkDB
All DBs
Position
37305..40829
Genome browser
AA seq
1174 aa
AA seq
DB search
MLETLIQAFAKDKDFGSVTSGIVSGMKEQLISGLSGSSRQIMMASLFTEVQRPLLVVTHN
MFAAHKLAEDLQEALTPEQVLLYPANELVAAESAISSPETLAQRIDVLMKCAAGFRGIVV
VPFSGIRRFVPAPESLAGAEIELQEGGTLVLDTFLTRMIELGYERVERVESRGEMSVRGG
IIDFYPATASLAYRIELFDEDIDSIRTFDPDDQRSIDKVKSITINPCREIIADRNRMNQA
ADQASVRLEMQIEKMTDRQAKIRLREEIGREIELMRQHIYFPEIYKYISLLYPEQVTLYN
YMPEDTILIMEEPARLLETAKQLERDESEWNMHLLQNGKNLPSLELAGDTDDIMYRSGFQ
TIWTSIFLRQVPHVLPGNIVNFVSRTMQDFHGQMNVLKSEMERWKKAGIQVLMVANGEER
MERVRRVLDDYDIETPIMIDGSLQTGFELPSINLAVITEGEMFSKKQRKVRKVSKNVDNA
ERIRSYTELKVGDYVVHQNHGIGKYMGIGTLEVAGIHKDYMHIMYAGGDKLSVPIEQIDL
IQKYVGSEEKEPKVYKLGGNEWTRVKSKVRSSVQDIADDLIKLYAERQEASGYGFEKDTA
EQQEFEDIFPYDETRDQLRAIDEIKKDMEKTRPMDRLLCGDVGYGKTEVAIRAAFKSAIE
GKQVAILVPTTILAQQHYETFRERFAEYPFNISVLSRFRTRKEQNDTIKGIKQGTVDIVI
GTHRLLSQDIIFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSYTLVREAVERELIRGGQIYYLYNKVQGIHEMAAQ
ISELVPDARVAVGHGQMSEQELEKTILDFLDGEFDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQSGFIASVGFDLYSQMLAEEIQKRKVTMLGEEDTKANDWNTVIDLS
IDAYLPADYIYDSIQKIEIYKKVAVLSAFDDISELEDELLDRFGELPEAVLQLLQVARLK
LYGKRYGIENISRRGDDVLLKFHTGQEKAFNLSKLSQVGNRFERRVQFNQGSNMVIQVKG
KGLTDGELLELLCQFLEAIMESFKLKGELQDVAN
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgttagaaactctgatacaagcatttgccaaagacaaggattttggttctgttacatct
ggtattgtgtccgggatgaaagaacaactcatctccggtttatccggttcttcacgccag
atcatgatggctagtctgttcacagaagtccaaagaccattattggtcgtcactcataat
atgtttgctgctcataagcttgctgaagatttacaggaagcgctaacacctgagcaggtt
ttgttatatccagctaatgaattggtagccgcagaatcagcaatatcaagcccggagaca
ttagcacaacgcattgatgtattgatgaaatgtgctgctggattcagaggcattgttgtt
gtgcctttttccggtattcggcgctttgtgcctgctccagaatcattagcaggtgctgaa
attgaattacaagaaggcggtacactggttctagatacatttttaacccgtatgattgaa
cttggctatgaacgcgtagaacgtgtagaatcacgcggtgaaatgagtgtacgtggtggg
attattgacttttatcctgcaacagcgagtttggcgtatcgaattgaattatttgatgaa
gatatcgattcgattcgtactttcgatcctgatgatcagcgctctattgataaagtgaaa
tctatcacgattaacccgtgccgcgaaattattgcagaccgtaatcgtatgaatcaagcg
gcagatcaagcttcagttcgccttgaaatgcaaatcgaaaaaatgacagatcgtcaggca
aaaattcgtctgcgcgaagaaattggtcgcgagattgaattgatgcgtcaacatatctat
ttcccggaaatctataaatacattagcttgctctatccagagcaggtgactttgtataat
tacatgcctgaagatacgattctgattatggaagaacctgcacgattgctcgaaacagcc
aagcaattagagcgggatgaatcagaatggaatatgcatttattgcaaaacggcaaaaac
ttgccttcacttgagcttgctggagatacagatgatattatgtatcgcagtggcttccag
acgatctggacatcgatctttttacgtcaggttccgcatgtgcttccaggtaatattgtt
aactttgtcagtcgtacgatgcaggatttccatgggcaaatgaacgtgctcaagtctgag
atggaacgctggaaaaaagcagggattcaagtattaatggtcgctaatggtgaagaacgg
atggagcgtgtgcgccgggttcttgacgattacgatatcgagacacctattatgattgat
ggcagtctgcaaacaggatttgaattaccatcgattaatttggcggttattaccgaaggc
gaaatgttctccaaaaagcaacgtaaagtacgcaaagttagcaaaaatgtagataatgca
gaacgaattcgtagttataccgagcttaaagtaggtgactatgttgttcaccaaaatcat
ggtatcggtaaatatatgggaatcggtacacttgaagtcgctggtattcacaaagattac
atgcatattatgtatgcaggtggcgataagctgtctgtaccgatcgaacagatcgatctg
atccagaagtatgtaggctctgaagaaaaagaacctaaagtctacaagcttggtggtaat
gagtggactagagtgaaaagtaaagttcgttcttctgttcaagatattgcagatgatctc
atcaaattatatgcagagcgtcaagaagcttctggatatggatttgaaaaagatacggct
gaacagcaagagttcgaagatattttcccttatgatgagactcgtgatcaattacgtgcg
attgatgaaatcaaaaaagatatggaaaaaacgcgtccgatggatcgtttgctttgcggt
gatgtaggatacgggaaaacagaagtggctattcgtgcagcatttaagtctgctattgaa
ggcaagcaagtggctattctggtaccgactacgattttggcgcaacagcattatgagaca
ttccgagagcggtttgccgaatatccttttaatattagtgtattgagtcgattccgtacg
cgtaaagagcagaatgatacgattaaaggcatcaagcaaggtacagttgatattgtgatc
ggtacccatcgtctattgtctcaagatattattttcaaagacctcggtctattgattgtc
gatgaagaacaacgattcggtgtatcacataaagaaaagttaaaacgtctcaaaaccaat
gtagacgtgctgacgctgacagcgacgccaattccgcgtacgcttcatatgtcgatgcta
ggtgtgcgtgatctttctgttattgagacgccaccagagaatcgtttccctgttcagact
tatgtggttgaacatagttatacattggttcgtgaagctgtagagcgcgaattgattcgc
ggtggtcagatttattacctttacaacaaagttcaagggattcacgaaatggcagctcaa
atctctgaactggttccagatgcaagagtcgctgtcgggcatggtcaaatgtctgaacaa
gaattggaaaaaacaattcttgatttcttagatggcgaattcgatgtactcgtaagtacc
agtattattgagacaggcgtagatattccaaacgtgaatacgcttattgtgcatgacgct
gataaaatggggctttctcagttgtatcagttgcgtggacgggttggacgttcgaaccga
atcgcgtatgcttattttacgtaccaacgggataaagtcttaactgaagtagcggagaaa
cgtctgcaatcgatcaaagaattcacagaactgggttcaggcttcaaaattgcgatgcgt
gatttatcgattcgtggagcaggtaatcttctaggggctgaacaatcaggctttatcgct
tcggtcgggttcgacctgtattcacaaatgctagctgaagaaattcagaaacgtaaagtg
acaatgctaggcgaagaagataccaaagcgaacgattggaatactgttattgatctgtct
attgacgcgtatctaccagctgattatatttatgacagtatccaaaaaatagaaatttac
aaaaaagttgctgtattgtctgcttttgatgatattagcgagcttgaagatgaactgtta
gatcgttttggcgaattgcctgaagcggtattacagttgttacaagtggcaagactcaag
ctgtacggcaaacgctacggtatcgaaaatatttcgcgccgcggagacgatgtgttgctg
aagttccatacagggcaagaaaaagcgttcaatttgagcaaactgtcccaagttggcaat
cgcttcgaaagacgtgtacaatttaatcagggttccaatatggttattcaagtcaaaggt
aaaggactaacggatggcgagctgcttgaactgctttgccaattcctcgaggctatcatg
gaatcattcaaactaaagggggaactacaggatgtggccaattaa
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