Paenibacillus kyungheensis: PQ456_22025
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Entry
PQ456_22025 CDS
T08956
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pka
Paenibacillus kyungheensis
Pathway
pka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PQ456_22025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pka03019
]
PQ456_22025
03009 Ribosome biogenesis [BR:
pka03009
]
PQ456_22025
Enzymes [BR:
pka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PQ456_22025
Messenger RNA biogenesis [BR:
pka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PQ456_22025
Ribosome biogenesis [BR:
pka03009
]
Prokaryotic type
rRNA helicases
PQ456_22025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
UvrD-helicase
NAT10_TcmA_helicase
CMS1
HTH_CLF_N
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WCT55793
UniProt:
A0AAX3M1F4
LinkDB
All DBs
Position
complement(5074419..5075864)
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AA seq
481 aa
AA seq
DB search
MSQSNFQEYGLSEDILKALQQLGYTQPTEVQQKVVPVALERQDLVVKSQTGSGKTAAFGI
PLCELVDWNENKPQALVLTPTRELAAQVKEDITNIGRFKRIKATAVYGKQPYAKQTLELK
QKSHVVVGTPGRVLDHIQRGTLALDKIEFLIIDEADEMLNMGFIEQVENIIKALPKDRTT
LLFSATLPQDIERLCHRHMRQPEHIEIQATGLTTATIEHALYEVKDADKFNLLQDITVVE
NPDSCIIFCRTQDNVNMVSERLTANDYTCAKIHGGMLQEDRFAVMEDFKRGQFRYLVATD
VAARGIDIDNITHVINYDLPLEKESYVHRTGRTGRAGKSGLAITFVTPFEDKFLREIQDY
IGFAIPHKEAPEATEVDRAREAFEGKMGIRAERKPAKSEQLNKEIMKLYFNGGKKKKLRA
VDFVGTIARIEGVTAEDIGIITIQDNVTYVEILNGKGPHVLKVMKDTTVKGKLLKVHKAL
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagtctaattttcaagagtatggattaagtgaagatattttaaaagcattgcaa
caactgggctacacccagcctacagaagtacagcaaaaagtggttcctgtggcgttggaa
cgtcaagatctagtcgttaaatcgcagacaggtagcggtaaaacggctgcattcggtatt
ccgttgtgcgagttagtagactggaatgagaacaaaccacaagcgttagtcctcaccccg
acacgtgagctggctgcacaggtaaaagaagatattactaatatcggacgctttaagcgc
atcaaagcaaccgcagtctatggaaaacaaccttatgccaagcagacactcgaattgaag
caaaaaagtcatgttgtagtcggtacacctggacgtgtattggatcatattcagcgcggt
acactggctttggacaaaatagaatttctgattattgatgaagccgatgaaatgttaaat
atgggctttatagaacaggttgaaaatattatcaaagcattgccgaaagaccgcactaca
ttgctattttctgccacattaccacaagatatcgaacgtctttgccaccgtcatatgcgt
cagccggagcatattgagattcaagcgacagggcttacgacggcaacgatagagcatgca
ttatacgaagtgaaagatgcagataaatttaatctgttgcaagatattacggttgttgag
aatccagatagctgtattattttctgccgtactcaagataatgtaaatatggtgagtgaa
cgattaacagcgaacgattatacctgtgcgaagattcatggcgggatgttgcaagaagat
cgttttgctgtaatggaagatttcaaacgtggacaattccgttatttagtagcaaccgac
gtggctgctcgcggaatcgatatcgacaatattacacatgtgattaactatgatctaccg
ctggaaaaagaaagctatgtgcaccgtacaggacgaacagggcgtgcaggtaaaagcggt
ctagcgatcacatttgtcactccatttgaagataaatttttgcgtgaaattcaagactat
atcggatttgcgattccgcacaaagaagcacctgaagcgacagaggtggatcgtgcgcgt
gaagcatttgagggtaaaatgggaattcgtgcagaacgcaaacctgccaaaagtgagcaa
ttgaacaaagaaatcatgaagttgtattttaatggtggcaaaaagaaaaaattacgtgca
gtcgattttgtaggcacgattgctcggatcgaaggcgtaacggctgaagacattggaatt
attacgattcaggataacgtgacttacgttgagattctgaatggcaaaggtcctcatgtt
ttgaaagtgatgaaggatactactgtcaaaggcaaattactcaaagtgcacaaagcgttg
aaataa
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