Paenibacillus kribbensis: B4V02_01735
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Entry
B4V02_01735 CDS
T05249
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pkb
Paenibacillus kribbensis
Pathway
pkb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B4V02_01735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkb03019
]
B4V02_01735
03009 Ribosome biogenesis [BR:
pkb03009
]
B4V02_01735
Enzymes [BR:
pkb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B4V02_01735
Messenger RNA biogenesis [BR:
pkb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B4V02_01735
Ribosome biogenesis [BR:
pkb03009
]
Prokaryotic type
rRNA helicases
B4V02_01735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Flavi_DEAD
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ASR45516
UniProt:
A0A222WHE2
LinkDB
All DBs
Position
384059..385633
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AA seq
524 aa
AA seq
DB search
MKNFAALGVEQHWVDVLKEQGITAPTPVQQESIPLLMQDQDVIAEAHTGTGKTLAFLLPI
LQKMNLEKRYPQALVIAPTRELALQITEEAKRLAAIEPNLSLLAVYGGQDVERQLRKLKG
GAQLIIGTPGRLLDHLRRGTLDLGGVKMLVLDEADQMLHMGFLNDVETILQEVPYRRQTM
LFSATMPAGIRKLARVYMNEPIDVKVKSASSVPVSQIRQVVVQTTDRGKQRALVDMLNTD
RPYLAVIFCRTKRRAAKLNEELQEMGFASGELHGDLSQNKREQVMKAFREAKLQLLVATD
VAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNIQKV
AGVTFTSSEGGGQRRPAPDTSERQGGERRSGRNDRRSFGGGDSGGGRRGSGREQAGRRDG
AGGERRSSRSSSERGGYDRSSGSSARGGRGRSAGQSSDRGGYDRSSGGSARGGRGRSAGQ
GSERGGYDRSSGGSARGGQGGRGGQAKGGPRGGQGQGGRRGRSR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaattttgcagcattaggcgtagagcagcattgggtagacgtcttgaaagagcag
ggaattacagcgcccaccccggtacagcaggaatcgattccgctgttgatgcaagatcag
gatgttattgccgaggcacatacaggaacaggtaaaacgcttgcgtttttactgccgatt
ttacagaaaatgaatttggaaaagcgttatccgcaggcacttgtaattgcgcctacgcgt
gaactggcactccagattacggaggaagcgaaacgattggcggcgattgagccgaattta
tcattactggctgtttacggaggacaggatgtagagcgtcagctccgtaagctgaaaggc
ggcgcacaactgattattggtacacccggacgactgctggatcatctgagacgtggcaca
ctggatttgggcggcgtcaaaatgctggtgctggatgaagctgaccaaatgctgcacatg
ggctttttgaacgatgtagagacgattcttcaggaggtcccttatcggagacaaacgatg
ctcttctccgcaacgatgccagccggcatccgcaagctggctcgtgtctatatgaatgaa
ccgatagatgtcaaagtgaaatctgcttcttccgttccggtaagccaaatccgtcaggta
gttgtgcaaacaacagaccgaggcaagcaacgggcattggtggatatgctgaatacggac
cgcccgtatttggcggttattttttgccgtacgaagcgccgtgccgccaagctgaacgag
gagctgcaggagatgggcttcgcaagcggtgagcttcacggagatttatcccagaacaag
cgtgagcaggtgatgaaggcgttccgtgaagcgaagcttcaattgctcgtagcgaccgat
gttgctgcacgcggcctggatgtagaaggcgtcacacatgtcttcaactatgatatgccg
caggatgccgaaagctatatccaccgcatcgggcgtaccggccgtgccggaggcaaaggt
gtggcggtgacgctcgccacgccgagggatgttccagagcttcggaacatccagaaggtg
gctggtgtcacattcaccagcagtgaaggcggggggcagcgtagacctgctcccgataca
tctgagcggcagggtggagaacgccgctcgggcagaaacgaccgccgttccttcggcggc
ggtgattccggcggcgggcgccggggcagcggccgtgaacaggcgggccgccgtgacggt
gcaggcggcgagcgccgctccagccgcagtagcagcgaacgcggcggatacgaccgcagc
agcggcagttcggcacgcggaggccggggtcgctcggcagggcaaagcagcgaccgtggc
ggatacgaccgcagcagcggcggttccgcacgcggaggccggggtcgctcggcagggcaa
ggcagcgaacgcggcggatacgaccgcagcagcggcggttccgcacgcggagggcaagga
ggccgtggtggacaagccaaaggcggtccgcgtggtggtcaaggacagggaggccgtcgt
ggacggtccagatag
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