Paenibacillus kribbensis: B4V02_16325
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Entry
B4V02_16325 CDS
T05249
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pkb
Paenibacillus kribbensis
Pathway
pkb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B4V02_16325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkb03019
]
B4V02_16325
03009 Ribosome biogenesis [BR:
pkb03009
]
B4V02_16325
Enzymes [BR:
pkb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B4V02_16325
Messenger RNA biogenesis [BR:
pkb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B4V02_16325
Ribosome biogenesis [BR:
pkb03009
]
Prokaryotic type
rRNA helicases
B4V02_16325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
CMS1
AAA_30
AAA_22
GRP
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ASR48150
UniProt:
A0A222WNN6
LinkDB
All DBs
Position
complement(3675252..3676832)
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AA seq
526 aa
AA seq
DB search
MTTFAEFDLEPKVIQAITELGFEEATPIQAKSIPIALQGKDMIGQAQTGTGKTAAFGIPL
ISKIARNDEKIRALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKKK
PQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTML
FSATMPPNIKRLAEQFLKDPEHVSVIPKQVSAPLIEQAYIEVPERQKFEALSRLIDMESP
ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIERVTR
HRIPRKPLPTLAEALEGKQRIIAERLLEAVEKGELNEYKGLAIQMLEQYDSVQLLSAALK
LMTGEKREASIELTPEDPIRAKRRKPDIRSGGRKPSNYSGRSNGGYNSNRSGGSGGKGGY
GGYNRGKEGGGYNRDSGSRYSGDRKPRTSSNGETRRPARREDSSSE
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
ttgacgacatttgcagaatttgatcttgaacctaaagtaattcaggcgattacggagctg
ggttttgaagaagctacaccaattcaggccaaatccattccgattgcactgcaaggcaaa
gacatgattggccaagcccaaacaggtactggtaaaaccgcagcctttggtattccattg
atcagcaaaattgccagaaacgacgaaaaaatcagagccctgattatggctccaacacgc
gagcttgcaattcaggtggctgaagaaattgaaaaactgtcccgctttaaaggtctccgc
acgttgccaatctatggcggtcaagatatcgtgcgccagattcgcgctttgaaaaagaaa
cctcaaattattattggtacaccaggacgcctgctcgatcatattaaccgcaaaactatc
aagctggaagacgtaaacacggttgttttggatgaagcggatgaaatgttggatatgggc
ttcatggaagatatccaatccattttgaagcaagttccggacgagcgccaaacgatgctc
ttctcggctacaatgcctcctaatattaaaagactggctgagcaattcctcaaagaccct
gagcatgtttcagttattcctaaacaagttagcgctccactgattgaacaggcctatatt
gaagttcctgagcggcaaaaattcgaagcattgagccgtctgatcgatatggaatcccca
gaactcgccatcgtattcggtcgtaccaagcgtcgggtagacgagctggctgaagctctg
caaaaacgtggatattctgcagatggcttgcatggtgacttatctcaaaaccagcgcgat
gctgttatgcgcaaattccgcgatggaagcattgacgtactcgtagcgactgacgtggct
gctcgtggtttggacgtttccggcgtaactcacgttgtgaactttgaccttccacaagat
ccggaaagctatgttcaccgtattggccgtactggacgtgcaggtaaagaaggggaagca
tggtctttcgtaacgcctcgtgaaattgatcatttacatttcatcgaacgtgtaactcgt
caccgtattcctcgcaagccgcttccaacactggccgaggctctggaaggcaaacaacgc
atcatcgcagaacgccttttggaagctgtagaaaaaggtgagttgaacgagtacaaaggt
ttggcgattcaaatgctggagcaatatgattctgtacaacttctttccgcagctctgaag
ctgatgactggtgagaagagagaagcatcaattgagctgactcctgaagatccaatccgt
gcaaaacgtcgtaaaccggacattcgttctggcggtcgcaagccatccaactatagcggt
cgcagcaatggaggctataattccaaccgttctggcggcagtggcggtaaaggcggatat
ggcggttacaaccgtggcaaagaaggcggtggctacaaccgtgattccggaagccgctac
agtggagatcgcaaaccacgcacgagcagcaatggagaaactcgtcgtcctgcaagacgt
gaagattcctcttccgaataa
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