Paenibacillus kribbensis: B4V02_20095
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Entry
B4V02_20095 CDS
T05249
Name
(GenBank) rhamnogalacturonan lyase
KO
K18197
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pkb
Paenibacillus kribbensis
Brite
KEGG Orthology (KO) [BR:
pkb00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
B4V02_20095
Enzymes [BR:
pkb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
B4V02_20095
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Gene cluster
GFIT
Motif
Pfam:
RGL11_C
RGI_lyase
FG-GAP
FG-GAP_3
TcdB_toxin_midN
Motif
Other DBs
NCBI-ProteinID:
ASR48833
UniProt:
A0A222WSZ9
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Position
complement(4505582..4508041)
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AA seq
819 aa
AA seq
DB search
MAQRKGAWRKGSLTAALAAMLAMTGTTGGVAAEDLTEPTTLQTESTIATEQYRSGSIQLE
KLDRGLVAAVTQEGVFLSWRLLAQEVNGYGSTGLTGADFNVYRDGKKIATVTDSTNYVDK
EGSGNAVYRVASLVNGKEKDRSAKVKPWQQGYYELPLQKPADGTTPAGEAYTYSANDMSV
GDVDGDGQYEFFVKWDPSNSKDVSQKGYTGNTYVDAYTFEGKLLYRIDLGVNIRSGAHYT
QMMVYDFDGDGKAELMFKTAPGTKTITFDKKGKPKKEKYITLPREDRKAGITHQDDYRLS
RTDYYEHVVNMFMNWTKHEEVVKGQWPATLEECFGIAPKYSYPLSRKDAESLTDYFMDVY
APSRSDKNKLREFEGFIVDGPEYLTIFKGKTGAELETIRYEPERHDDGLMWGDYAMARIE
PANRVDRFLAGVAYLDGRKPYAVFARGYYTRSTLVAYTWDGRHLQKHWMVDSGWAPMTNP
FNDSPHGRDGTDPKFGTLTTQGAHSLSMVDVDGDGKDEIVYGSATIDHDGSLLYSSFDVM
PPESAIPGQTARLGHGDALHVTDIDPDRPGKEIFMVHEGGTYAPYGYSLRDAKTGKVIYG
GYSGKDTGRGMIGDIDPDQRGLETWAMGLWTAAGKQLDTKMPGTNMSIKWAANMTTQIVN
GAIDVTPTIEDWKRGTLLTATGTKTNNYTKGTPSLVADVFGDWCEEMLVRTADSSAIRIY
LSTEPTTHKLYTLMHDPQYRADVARQNTGYNQPSYTSFYFASDMDWANVPIPKLYTPRAL
MEEESSDEADEAEASKIDATKLDEKEVGGVKVDGAEIDG
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaaggaaaggcgcatggcgaaagggaagcttgacggccgcgttggcagcgatg
ctggcgatgacaggcacgactggaggagtggctgcggaagacttgaccgaaccgacgacg
ctacagacggaatcaacaattgctactgaacagtatcgcagtggcagcatccaactggaa
aagctggatcgcggactggtagctgcggtgacgcaggagggtgtgtttttaagttggcgg
ctattggcccaggaagtgaatggctacggctcaacaggactgacgggagcggactttaac
gtataccgtgacggcaagaaaattgcgacggtgaccgatagcaccaactatgtcgataag
gaaggaagcggaaatgcggtgtacagggtggcttcactcgttaacgggaaagaaaaggat
cgcagtgccaaagtgaagccatggcagcagggctactatgagcttcctcttcaaaagcct
gccgatggcacaacacccgcaggtgaagcctatacctactcagccaacgatatgagtgtg
ggcgatgtggacggagacggacaatatgagttttttgtaaaatgggacccgtcgaattcc
aaagatgtatctcagaaaggctacaccggaaatacgtatgtcgatgcgtatacgttcgag
ggcaaactgctgtatcggattgacctcggtgtgaatattcgatcaggtgcgcattataca
cagatgatggtgtacgattttgacggagacggcaaagccgagttgatgttcaagacggct
ccaggcaccaaaacgattacctttgacaagaagggcaagccgaaaaaagaaaaatatatt
accttgccccgcgaggatcgcaaagctggaattacacatcaggatgattaccgtttgagc
cgcacggattattatgagcatgtagtgaacatgttcatgaactggacgaagcatgaagaa
gtggtcaaaggacagtggcctgctacgctggaggagtgctttggtattgctcccaagtac
agctatccgttatcccgaaaggatgcggaaagcctgacggactattttatggatgtatac
gccccttcgcggagcgacaaaaacaagctgagagagttcgaaggctttattgtggatggg
ccggagtatttgaccattttcaaaggaaaaacgggagctgagctggaaaccatccgctat
gagccggagcgccatgacgacggcctcatgtggggagattacgctatggcccggattgaa
cctgccaaccgtgtagatcgtttcctggcaggggtggcttatctggacggccgcaagcct
tatgctgtttttgcacgcggctattatacccgttccacgctggtcgcctatacatgggac
ggccgccatctccaaaagcattggatggtggacagcggttgggcacccatgaccaatccg
tttaacgatagcccacacggacgggacggaacagacccgaaattcggcaccttgactaca
cagggagcgcactcactgagtatggtggatgtagatggtgacggcaaggacgagatcgta
tacggctctgctaccatcgaccatgacggcagcctgctgtacagctcgtttgatgtcatg
cctcctgaaagcgccattccgggccaaaccgccagactgggacacggcgacgcactgcat
gtgactgatattgacccggatcggccgggcaaagaaatctttatggtgcatgagggtgga
acctatgctccatatggctattcgctacgggatgccaagacgggtaaagtcatctacggc
ggatattccggcaaggatacaggccgcggaatgatcggcgacatagacccggatcagcga
gggctggagacctgggctatgggcttgtggactgcggcgggcaagcaacttgatacgaag
atgccaggcaccaatatgagtatcaaatgggctgccaatatgaccacacaaatcgtgaac
ggggcgatcgacgtaacccctaccattgaagactggaaacgcggcacattgctgaccgca
acaggcaccaaaacgaacaactatacgaaaggaacgccatcgctggttgctgacgttttc
ggagattggtgcgaggaaatgcttgtccgtacagcggatagctcggcgatccgtatctat
ttgagtaccgagcctacgacgcataagttatacacgttgatgcatgatccgcagtaccgg
gcggatgtggcgcgtcagaataccggctataaccagccgtcctacacgagcttttacttc
gcatccgatatggattgggcgaacgtgccgattcccaagctctacacaccaagagccttg
atggaggaagagagcagtgacgaagctgatgaggcagaggcatcgaagatcgatgcaaca
aagttggatgaaaaggaagtcggtggagtgaaagttgatggggcggaaatagatggatag
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