Paenibacillus kribbensis: B4V02_20995
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Entry
B4V02_20995 CDS
T05249
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pkb
Paenibacillus kribbensis
Brite
KEGG Orthology (KO) [BR:
pkb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pkb03009
]
B4V02_20995
Enzymes [BR:
pkb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
B4V02_20995
Ribosome biogenesis [BR:
pkb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
B4V02_20995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
PrmA
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_11
RrnaAD
N6_N4_Mtase
Methyltransf_12
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
ASR48995
UniProt:
A0A222WSM3
LinkDB
All DBs
Position
complement(4713270..4715162)
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AA seq
630 aa
AA seq
DB search
MTSNRSGRGKSRRNAAAPVQGKPQKKTVQSKKEQGQSQGGAGKGQLRIGIGNGNGNFDGN
IKDTDRNKMEKGWGARRSSGDGQGKERGAQRSSGDVREQHALNRNRVRAERTDLPVQKND
EAVIDIIGMNHDGEGVGRVEGFTLFVPGALPGEKVRVKVLKTKKQYGYAKLLEIVQASPD
RIAAPCAIYDQCGGCQIQHMSYEAQLSWKRQHVVDVLERIGKLSVADSTSAGTESGANEN
TTTESGNQAAQVLATGVEADTASASSSAVSTDPNTDSMSVNLAREQGVVVHPTLGMSEPW
RYRNKAQVPIGVTEGGLVGGFYARGSHRIVDMDTCLIQDERNDEVVARVKEIGRMLGISA
YNEETGRGLLRHVVVKTAFRTGEMMLVLVTNGRDIPHADAWVGSIREHIPHVASICQNVN
TKRTNVIFGDETRVLWGRDVIYDYIGNVQFAISARSFYQVNPVQTEVLYSKTVEYAGLTG
KETVIDAYCGIGTISLFLAQHADQVYGVEIVKEAIEDARSNALLNNMRNVKFEVGASEDV
IPAWKQQGITPDVIVVDPPRKGCDPRLLDTILEMQPERVVYVSCNPSTLARDLRILEDGG
YRTVEVQPVDMFPHTVHVECVVVIYRDKKY
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgacgagtaaccgcagcggacgtggaaaaagccgccggaatgcagcagctcctgttcaa
ggaaagccgcagaaaaagactgtgcagtcgaagaaggagcaaggacagtctcaaggtgga
gctggaaagggacagcttcgaattggaattgggaatggaaatggaaattttgatggaaat
ataaaggatacggaccggaataagatggaaaaagggtggggggctcgtcgttcttccggt
gatggacagggaaaagagcgaggggcacaacgttcttccggtgatgtacgggaacagcac
gctttaaaccgcaaccgagtccgtgcagagcgtaccgatctgcctgtgcaaaaaaacgat
gaagccgtaatagacattatcggcatgaaccacgatggcgagggagtagggcgtgtcgaa
ggttttacgctgtttgttccaggcgcattgccgggggaaaaggtacgagtcaaggttctg
aaaacgaaaaaacagtatggctatgccaagctgctggagatcgtacaggccagccctgac
cggattgcggcgccttgcgccatctatgatcagtgcggtggctgccaaatccagcatatg
agctacgaagcacagctgagctggaagcgccagcacgtcgtggacgtactggaacgtatc
ggcaagctaagcgtggctgatagcaccagtgccggaacggagtcgggtgcgaatgaaaac
acgactaccgaatccggtaaccaggcagcacaggtattggctacgggtgtagaggccgat
acagcctcagcttcgtcctcggcagtaagtacggacccgaataccgatagcatgtccgta
aatttggcgcgtgagcaaggcgtagtggtacatcctacgctcggtatgagcgagccctgg
cgatatcgcaacaaagcccaggtaccgattggtgtcaccgagggcggacttgtcggcggc
ttctacgcgcgtggcagccatcgcatcgtggatatggacacctgtctcattcaggatgag
cgcaacgacgaggttgtcgcacgtgtcaaagagattggccgaatgttgggtatcagtgca
tataatgaggaaaccggacgcggattgctgcgccatgtcgtcgtgaagaccgcttttcgc
acgggtgaaatgatgctggtcctcgtcaccaatggacgagatattccgcatgctgatgcc
tgggtcggcagcatccgtgagcatattccgcacgtggcaagcatttgccagaacgtgaat
accaagcgaacgaacgttatttttggcgacgaaacgcgcgtcctgtggggccgtgacgtg
atctacgactatattggaaacgtccagtttgcgatttccgccagatccttttatcaagtg
aatcccgttcaaacggaagtgctgtacagcaaaaccgtcgaatatgccgggcttacgggc
aaagaaacggtgattgacgcgtattgcggtattggcacgatctctttgttcctcgctcag
catgcggatcaggtgtatggggtggagatcgtcaaagaagccatcgaggatgcgcggagt
aatgcgctgttgaacaacatgcgtaatgtgaagtttgaggtaggcgcgtccgaggacgtc
attcccgcctggaagcagcagggcatcacccccgacgtcatcgtcgtcgatccgccccgt
aagggctgcgatccacgcctgctcgacaccattctggagatgcagccagagcgcgtggtg
tatgtatcctgcaatccaagcacgctggcacgggatttaaggatattggaggatggcggg
tataggacggtggaagtgcagcccgtggatatgtttccgcatacggtgcatgtggagtgc
gtggtagtaatatatcgagataagaagtattga
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