Pseudomonas knackmussii: PKB_0160
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Entry
PKB_0160 CDS
T03081
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc03420
Nucleotide excision repair
pkc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PKB_0160 (uvrD)
03430 Mismatch repair
PKB_0160 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkc03400
]
PKB_0160 (uvrD)
Enzymes [BR:
pkc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PKB_0160 (uvrD)
DNA repair and recombination proteins [BR:
pkc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PKB_0160 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PKB_0160 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_11
VMAP-M0
DUF1175
Motif
Other DBs
NCBI-ProteinID:
CDF81539
UniProt:
A0A024HAE1
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Position
complement(166571..168751)
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AA seq
726 aa
AA seq
DB search
MNDDLSLLLNSLNDPQRQAVAAPLGQQRVLAGAGSGKTRVLVHRIAWLIQVEHASPHSIL
AVTFTNKAAAEMRARIEQLLGISPAGMWVGTFHGLAHRLLRAHWQEAGLPENFQILDSDD
QLRIVKRVVRELGLDEQRWPPRQAQWFINGQKDEGNRPQNIQASGDLYLATMVKVYEAYE
EACARAGVVDFAELLLRSLDLWRNNPGLLAHYQRRFRHILVDEFQDTNAVQYAWLRFLAK
GGESLMVVGDDDQSIYGWRGAKIENIQHFADDFAGTADIRLEQNYRSTGTILKAANALIA
NNQGRLGKELWTDGVDGDPITLYAGFNEHDEARYIVESIEDALRKDGLKRSEIAILYRSN
AQSRVLEEALLREKIPYRIYGGQRFFERAEIKNALAYLRLIRLRDDDAALERVINIPPRG
IGEKTVEAIRNAARLNGTSMWRAINDVIAAKAVAGRAASALNGFLETVDLLAQKVEEMPL
HLMTQTVIEESGLITYHKEEKGEKGQARVENLEELVSAARAFETPDEEDVPPLVAFLDHT
ALESGDTQADAFEDSVQLMTLHSAKGLEFPLVFLAGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQRLVMTYAETRRLYGSETYNKVSRFVREIPPSLIQEVRLSNSVSRPLSGNQ
RSGNLFSGAGVPDTPFSLGQTVRHPLFGDGVILNFEGSGAQARVQVNFDSEGSKWLMLGY
AKLEAV
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacgacctctccctcctgctcaactccctcaacgatccccagcgccaggccgtc
gccgcgcccctcggccagcaacgcgtgctggctggtgccggctccggcaagacccgcgtg
ctggtgcatcggatcgcctggctgatccaggtcgagcacgcctcgccgcacagcatcctg
gcggtgaccttcaccaacaaggccgcggcggagatgcgcgcgcgcatcgagcagctgctg
ggcataagcccggccggcatgtgggtcggcaccttccacggcctggcgcaccgcctgctg
cgcgcgcactggcaggaggccgggctgccggagaacttccagatcctcgacagcgacgac
cagctgcgcatcgtcaagcgcgtggtccgcgagctgggcctggacgagcagcgctggccg
ccgcgccaggcgcagtggttcatcaacgggcagaaggacgagggcaaccggccgcagaac
attcaggccagcggcgacctctacctggcgaccatggtcaaggtctacgaggcttacgaa
gaggcctgcgcgcgcgccggcgtggtcgacttcgccgagctgctgctgcgctcgctggac
ctgtggcgcaacaacccgggcctgctggcgcactaccaacgacgcttccggcacatcctg
gtcgacgagttccaggacaccaacgccgtgcagtacgcctggctgcgcttcctcgccaag
ggcggcgaaagcctgatggtggtgggcgacgacgaccagtcgatctacggctggcgcggt
gcgaagatcgagaacatccagcacttcgccgacgacttcgccggcaccgcggacatccgc
ctggagcagaactaccgctccaccggcaccatcctcaaggccgccaacgccctgatcgcc
aacaaccaggggcgcctgggcaaggaactctggaccgacggagtcgatggcgacccaatt
accctctacgccggcttcaacgaacacgacgaagcccgctacatcgtcgagagcatcgag
gacgccctgcgcaaggacggcctcaagcgcagcgaaatcgccatcctctaccgctccaac
gcccagtcgcgggtgctggaagaggcgctgctgcgcgagaagattccctaccgcatctac
ggcggccaacgcttcttcgagcgcgccgagatcaagaacgccctcgcctacctgcgtctg
atccgcctgcgcgacgacgacgccgcgctggagcgagtgatcaacatcccgccacgcggg
attggcgagaagacggtcgaggccatccgcaacgccgcgcgcctgaacggcacctccatg
tggcgtgcaatcaatgacgtgatcgccgccaaggccgtggccggccgcgccgccagcgcg
ctcaacggcttcctcgaaaccgtcgacctgctggcgcagaaagtcgaagagatgccgctg
cacctgatgacccagacggtcattgaggagtccgggctgatcacctaccacaaggaagag
aaaggcgagaaaggccaggcccgggtagaaaacctggaagaactggtcagcgccgcccgc
gccttcgagacgccggacgaagaggacgtgccgccgctggtggccttcctcgaccacacc
gcactggagtccggcgacacccaggccgacgccttcgaggacagcgtgcagctgatgacc
ctgcacagcgccaagggcctggaattcccgctggtgttcctcgccggcatggaagaaggc
ctgttcccgcacaagatgagcctggaagagcccggccgcctggaagaggaacgccgcctc
gcctacgtcggcatcacccgcgccatgcaacgcctggtgatgacctacgcggaaacccgc
cgcctctacggcagcgagacctacaacaaggtctcgcgcttcgtccgcgaaatcccgccg
agcctgatccaggaagtgcgcctgtccaactcggtcagccgcccgctgtcgggcaaccag
cgcagcggcaacctgttcagcggcgccggcgtccccgacacccccttctccctcggccag
accgtccgccacccgctgttcggcgacggcgtgatcctcaacttcgaaggctccggcgcc
caggcccgggtgcaggtcaacttcgacagcgaaggcagcaagtggctgatgctggggtat
gcgaagttggaagccgtctga
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