Pseudomonas knackmussii: PKB_0327
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Entry
PKB_0327 CDS
T03081
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PKB_0327 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkc03021
]
PKB_0327 (rho)
03019 Messenger RNA biogenesis [BR:
pkc03019
]
PKB_0327 (rho)
Transcription machinery [BR:
pkc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PKB_0327 (rho)
Messenger RNA biogenesis [BR:
pkc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PKB_0327 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
AAA_22
Mor
Motif
Other DBs
NCBI-ProteinID:
CDF81705
UniProt:
A0A024H9T5
LinkDB
All DBs
Position
356867..358129
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AA seq
420 aa
AA seq
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MNLTELKQKPIAELLEMSDAMGLENMARSRKQDIIFALLKKHAKGGEEISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSIN
FDRPENAKNKILFENLTPLFPTKRLTMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTILATALIETGSKMDEVIYEEFKGTGNSELILDRRISEKRVFPAINI
NRSGTRREELLTGEEELQRMWILRKILHPMDEIAAVEFLLDKLRQTKTNDEFFDSMKRSK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgaccgaactcaagcaaaagccgattgccgaactgctggaaatgtccgatgcc
atgggcctggaaaacatggctcgttcgcgcaagcaggacatcatcttcgcgctgctgaag
aagcacgcgaaaggtggcgaggaaatctccggtgacggcgtgctggagattctccaggat
ggcttcggcttcctgcgctccgccgactcctcgtacctggccggcccggacgacatctac
gtctcgcccagccagatccgccggttcaacctgcgcaccggggacaccatcgttggcaag
attcgtccgccgaaggaaggtgagcgttacttcgcgctgctcaaggtcgattcgatcaac
ttcgatcgtccggagaacgcgaagaacaagattctcttcgagaacctgaccccgctgttc
ccgaccaagcgcctgaccatggaagccggcaacggctccaccgaggacctcaccggccgg
gtgatcgacctctgcgctccgatcggcaagggccagcgcggcctgatcgtcgcaccgccg
aaagccggtaagaccatcatgctgcagaacatcgcgtccaacatcacgcgcaacaacccc
gagtgccacctgatcgtcctgctgattgacgagcgcccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtcgcctccaccttcgatgaaccgccgacccgccacgtg
caggtcgccgagatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
atcatcctgctcgactccatcacccgcctggcgcgtgcctacaacaccgtgatcccgagc
tccggcaaggtgctcaccggtggtgtcgacgcccacgccctggagaagcccaagcgcttc
ttcggcgccgcgcgcaacatcgaggaaggcggttcgctgaccatcctcgccaccgcgctg
atcgaaaccggctcgaagatggacgaggtgatctacgaggagttcaaaggcaccggtaac
tcggagctgatcctcgaccgccgcatctccgagaagcgcgtcttcccggccatcaacatc
aaccgttcgggcacccgtcgcgaagagctgctcaccggtgaggaagagctgcagcgcatg
tggattctgcgcaagatcctccacccgatggacgagatcgccgccgtcgagttcctgctc
gacaagctgcgtcagaccaagaccaacgacgagttcttcgactcgatgaagcgcagcaag
taa
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