Pseudomonas knackmussii: PKB_0529
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Entry
PKB_0529 CDS
T03081
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PKB_0529 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkc03021
]
PKB_0529 (rpoD)
Transcription machinery [BR:
pkc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PKB_0529 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF8246
GBP_C
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
CDF81906
UniProt:
A0A024HAJ7
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All DBs
Position
complement(576161..578008)
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AA seq
615 aa
AA seq
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MSGKAQQQSRLKELISRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFET
APDADALLLAETDTDEAAAEEAAAALAAVESDVGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAQFPGAVDSILDDYKRVVTEGGRLSDILSGYIDPDDGSVPAEEV
ELDLKDSSAAAKEEEDEEEESESDSEEEEGDGGPDPEEAARRFGLVADQLEKFKKALKKH
GRGTKQVDEELLALSELFMPIKLVPKQFDALVARVRDALDRVRQQERAIMQLCVRDARMP
RADFLRLFPGNETDEGWVDAVLKGKPKYAEALERLKADVVRNQQKMSALESEVELKVNEI
KDVNRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEVATSE
SLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatctcgtcttaaagagttgatcagccgtggtcgtgag
cagggttacctgacttacgcggaggtcaacgaccacctgccggaggatatttccgatccg
gaacaggtagaagacatcatccgcatgatcaatgacatggggatcaacgtattcgagaca
gccccggatgcggatgccctgctgctggcggaaaccgataccgacgaagccgctgccgaa
gaggccgctgcggccctggctgcggtagagagcgatgtcggccgcaccaccgacccggtg
cgcatgtacatgcgcgaaatgggtaccgtggagctgctaacccgcgaaggcgaaatcgaa
atcgccaaacgcatcgaggaaggcatccgcgaggtgatgggtgccatcgcccagttccct
ggcgcggttgacagcattctcgacgattacaaacgggtggtcaccgaaggcggccgcctg
tccgacatcctcagcggctacatcgatccggacgacggctcggtaccggccgaggaagtc
gaactcgacctcaaggacagcagtgctgctgccaaggaagaagaggacgaggaagaggaa
agcgaaagcgactccgaggaagaagaaggcgatggcggtccggatccggaagaagccgcg
cgtcgcttcggcctggtcgccgatcagcttgagaaattcaagaaggccctgaagaagcac
ggccgcggcaccaagcaagtcgacgaagaactgctcgccctgagcgagctgttcatgccg
atcaagctggtacccaagcagttcgacgccctggtggcccgtgtccgcgatgcactggat
cgcgtacgccagcaagaacgcgccatcatgcaactgtgcgtgcgtgatgcgcgtatgccg
cgcgccgacttcctgcgcctgttcccgggcaacgaaaccgacgaaggctgggtcgacgcc
gtactcaagggcaagcccaagtacgccgaagccctggagcgcctgaaggccgacgtagtt
cgcaaccagcagaaaatgtctgccctggaaagcgaagtcgagctgaaggtcaatgagatc
aaggacgtcaaccgcgccatgtccatcggcgaggccaaggcccgccgtgccaagaaggaa
atggtcgaggcgaacctgcgtctggtgatctcgattgccaagaagtacaccaaccgcggc
ctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtggacaag
ttcgaataccgtcgcggctacaagttctcgacctacgccacctggtggattcgccaggcg
atcactcgttcgatcgccgaccaggcgcgcaccatccgtatcccggtgcacatgatcgag
acgatcaacaagctcaaccgtatttcccgccagatgctgcaggaaatgggtcgtgaaccg
accccggaagagctgggcgaacgcatggacatgccggaagacaagatccgcaaggtcctg
aagatcgccaaggaaccgatctccatggaaaccccgatcggtgacgacgaagattcgcac
ctgggcgacttcatcgaggactccaccatgcagtccccgatcgaagtggcgaccagcgag
agcctcaaggaagccacccgcgaagtcctcgccggcctcaccgcccgggaagccaaggtc
ctgcgcatgcgcttcggcatcgacatgaataccgaccacaccctcgaggaagtcggtaaa
cagttcgatgtaacccgcgagcgtatccgccagatcgaagccaaggcgctgcgcaagctg
cgtcacccgtcgcgaagcgagcatctacgctccttcctcgacgagtga
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