Pseudomonas knackmussii: PKB_0613
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Entry
PKB_0613 CDS
T03081
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PKB_0613 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkc03021
]
PKB_0613 (rpoB)
03400 DNA repair and recombination proteins [BR:
pkc03400
]
PKB_0613 (rpoB)
Enzymes [BR:
pkc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PKB_0613 (rpoB)
Transcription machinery [BR:
pkc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PKB_0613 (rpoB)
DNA repair and recombination proteins [BR:
pkc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PKB_0613 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
CDF81981
UniProt:
A0A024HAR9
LinkDB
All DBs
Position
654413..658486
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDQIRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSSKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNAFYDTNLFQVKGET
LNLELVPQRLRGEIAAFDIKDASGKVIVEQGRRITARHINQLEKAGIKELEVPFDYLIGR
TVAKAVVHPATGEIIAECNTELSVDVLAKIAKAQVVRLETLYTNDIDCGPFISDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GPGVLSKEDIVEVLKTLVAIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVK
EGQVSDDIVFLSAIEEADHVIAQASATLDEQGRLVDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
VIARGDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALVGSIADGGPALKKGTEITHEYLDGLERGQWFKLRMA
EDALNEQLEKAQAYISDRRQMLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKIAELRQFMNEIYNEIGGRQENLDELNDNEIIALANNLKGGVPMATP
VFDGAKEREIKAMLKLADLPESGQMRLFDGRTGNQFERETTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtatttgctggccatccagctggattcctatcgcgaattcctgcag
gcaggtgcaagcaaggatcagatccgtgacatcggtctgcatgcggccttcaagtccgtt
ttcccgattatcagctattccggcaatgctgccctggaatacgtcggttatcgcctgggc
gagccggcatttgacgtcaaggagtgcgtgctgcgcggcgtgacattcgctgtcccgctg
cgtgtgaaagtgcgcctgatcattttcgacaaagaatcgtcgagcaaagcgatcaaggac
atcaaggaacaggaagtctacatgggggaaatccccctgatgaccgagaacggtaccttc
atcatcaacggtaccgagcgcgtcatcgtctcccagctgcaccgttccccgggtgtgttc
ttcgaccacgaccgtggcaagacccacagctccggcaagctgctgtactccgcgcgcatt
attccttaccgcggttcctggctggacttcgagttcgatccgaaggactgcgtgttcgtg
cgtatcgaccgtcgccgcaagctgccggcgtctgtcctgctgcgcgcgctgggttacagc
actgaagaagtgctcaacgccttctatgacaccaacctgttccaggtgaagggcgagacc
ctcaatctggagctggtgccgcaacgtctgcgtggggaaatcgccgcgttcgatatcaag
gacgcttccggcaaggtcatcgtcgagcagggccgccgtatcaccgcgcgccacatcaat
cagctcgagaaggccggcatcaaagagctggaagtgcccttcgactacctcattggccgt
accgtggccaaggctgtcgtgcacccggctaccggcgagatcatcgccgagtgcaacacc
gagctgtccgtcgacgttctggcgaagatcgccaaggcccaggtcgtgcgcctggagacc
ctgtacaccaacgacatcgactgcggcccgttcatctcggacaccctgaagatcgactcc
accagcaaccagctggaagcactggtcgagatctaccgcatgatgcgtccgggcgagccg
ccgaccaaggaagccgcagagaccctgttcggcaacctgttcttcagcgccgagcgttac
gacctgtctgccgtcggccgtatgaagttcaaccgccgtatcggccgcaccgagatcgaa
ggtccgggcgtgctgagcaaggaagacatcgtcgaggttctgaagaccctcgtcgctatc
cgtaacggcaaaggcatcgtcgacgacatcgaccacctgggtaaccgtcgcgttcgttgc
gtcggcgagatggccgagaaccagttccgcgttggcctggtacgcgtagagcgcgcggtc
aaggaacgtctgtcgatggccgaaagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccggtggctgccgcgatcaaggagttcttcggttccagccagctgtcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgcgtctccgcactcggtccg
ggcggtctgactcgcgagcgtgcgggcttcgaggttcgtgacgtacacccgacccactac
ggccgcgtgtgcccgatcgaaacccctgaaggtccgaacatcggtctgatcaactccctg
gcgacctacgcccgcaccaacaagtacggcttcctggaaagcccgtaccgcgtggtcaag
gaaggtcaggtcagcgacgacatcgtcttcctctccgcgatcgaagaggccgatcacgtg
atcgcccaggcctccgcgaccctggacgagcaaggccgtctggtcgacgagctggtagcc
gtacgtcacctgaacgaattcaccgtgaaggcgccggaagacgtcaccctcatggacgtt
tcgccgaagcaggtcgtttccgtcgctgcctcgctgattccgttcctcgagcacgacgac
gccaaccgtgcactcatgggttcgaacatgcagcgtcaggctgtaccgaccctgcgcgcc
gacaagccgctggtaggtaccggcatggagcgcaacgtcgcccgtgactccggtgtctgc
gtggttgcccgtcgtggcggcgtgatcgactcggtcgacgccagccgtatcgtggtgcgc
gtggcggacgacgaagtcgagactggcgaagccggtgtcgacatctacaacctgaccaag
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgac
gtgatcgctcgcggtgacatcctcgccgacggtccgtccaccgatatgggtgaactggcc
ctgggtcagaacatgcgcgttgcgttcatgccctggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgcgtggtccaggaggatcgtttcaccacgatccacatccaggaa
ctgacctgcgttgcccgtgacaccaagctcggcccagaagaaatcaccgcggacatcccg
aacgtgggtgaggctgcgctgaacaagctggacgaggcaggtatcgtctatgttggcgcc
gaagtgcaggctggcgacatcctggtcggtaaggtcaccccgaaaggcgagacccagctg
actccggaagagaagctgctgcgcgcgatcttcggtgagaaggcgtccgacgttaaggac
acttccctgcgcgtgccgactggcaccaagggcaccgtgatcgacgtacaggtcttcact
cgcgatggcgtcgagcgcgacagccgtgccctgtccatcgagaagatgcagctggacgag
atccgcaaggacctcaacgaagagttccgcatcgtcgaaggtgccaccttcgagcgtctg
cgttccgccctggtcggctccattgccgatggcggcccggcgctgaagaaaggcaccgag
atcacccacgagtacctcgacggtctcgagcgcggccagtggttcaagctgcgcatggct
gaagacgcgctgaacgagcagctggagaaggctcaggcctacatcagcgatcgccgtcag
atgctcgacgacaagttcgaggacaagaagcgcaagctccagcagggcgacgacctggct
ccgggcgtgctgaagatcgtcaaggtctacctcgccatcaagcgccgcatccagccgggc
gacaagatggccggccgtcacggtaacaagggtgtggtctcggtgatcatgccggtcgaa
gacatgccgcacgatgccaatggcactccggtggacatcgttctcaacccgctgggcgta
ccgtcgcgtatgaacgtcggtcagatcctcgaaacccacctgggcctcgcggccaagggg
ctgggcgagaagatcaaccgcatgctcgaagagcagcgcaagatcgccgaactgcgccag
ttcatgaacgagatctacaacgagatcggtggccgccaggagaacctggacgagctgaac
gataacgagatcatcgctctggccaacaacctcaagggcggcgtgcccatggctaccccg
gtcttcgacggtgccaaggaacgcgagatcaaggccatgctgaagctggccgatctgccg
gagagcggccagatgcgcctgttcgatggccgcaccggcaatcagttcgagcgtgagacc
accgttggttacatgtacatgctcaaactgaaccacctggtcgatgacaagatgcacgca
cgttccaccggctcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggccagcgcttcggggagatggaggtctgggcactggaagcctacggcgccgcctac
accctgcaggaaatgctgaccgtgaagtcggacgacgtgaacggccggaccaagatgtac
aagaacatcgtggacggcgatcaccgcatggaggccggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgttcgctcggcatcgacatcgaactggaaaccgaataa
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integrated database retrieval system
