Pseudomonas knackmussii: PKB_0820
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Entry
PKB_0820 CDS
T03081
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PKB_0820 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkc03019
]
PKB_0820 (rhlE)
Enzymes [BR:
pkc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PKB_0820 (rhlE)
Messenger RNA biogenesis [BR:
pkc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PKB_0820 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
CDF82188
UniProt:
A0A024HCJ1
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All DBs
Position
842679..844025
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AA seq
448 aa
AA seq
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MTFAELGLIEPLLRALDGLDYQKPTPVQAQAIPAVLKGRDLLAAAQTGTGKTAGFALPLL
QKLLQEGPQVAANSIRALVLVPTRELAEQVHESFRVYGQHVPLRTAVAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLYRQNALKFTQLQVLVLDEADRMLDLGFARELDEVFAALPKRR
QTLLFSATFSEAIRKMAGGLLRDPLSIEVAPRNTAAKTVKQQLITVDKKRKAELFLHLLQ
SRGWRQALVFAKTRKGVDELVGRLQAEGLAADSIHGDKPQPSRLRALQRFKDGEVNFLVA
TDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQALSLVCADEVQQLAAIE
TLIGQLLTRSEEDGFEAEHRVPQTTLGGQLVKKPKKPKQPKVPEGKPGKVHLGNLLDDKP
QVKAVRKAPGFAKAPAGKKPSAPKGKGR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgccgaactcggcctgatcgaacccctgctgcgcgccctcgacgggctcgac
taccagaagccgacgccggtgcaggcgcaggcgattcccgccgtgctcaagggccgcgac
ctgctcgccgcggcgcagaccggcaccggcaagaccgccggcttcgcgctgcctttgctg
cagaaactgctccaggaaggcccgcaggtggccgccaactcgattcgcgcgctggtgctg
gtgccgacccgcgagctggccgagcaggtccacgagagcttccgtgtctacggccagcac
gtgccgctgcgcacggcggtggcctacggcggggtgagcatcaacccgcagatgatgaag
ctgcgcaagggcgtcgacgtgctggtcgccaccccgggccggttgctcgacctgtaccgg
cagaacgccctgaaattcacccaactgcaggtgctggtgctcgacgaagccgaccgcatg
ctcgacctgggcttcgcccgcgagctggacgaggtgttcgccgcgctgcccaagcgccgc
cagaccctgctgttctccgcgaccttctccgaggcgatccgcaagatggccggcggcctg
ctgcgcgacccgctgtccatcgaagtggcacctcgcaacaccgcggcgaagacagtcaag
caacagctcatcaccgtggacaagaagcgtaaggccgagctgttcctgcacctgctgcag
agccgcggctggcgccaggcgctggtgttcgccaagacccgcaagggcgtcgacgaactg
gttggtcgcctgcaggccgaaggcctggccgccgattcgatccacggcgacaagccgcag
ccgtcgcgcctgcgcgcgctgcagcggttcaaggacggcgaggtgaacttcctggtcgcc
accgacgtcgccgcgcgcggcctcgacatcgaggagatgccgctggtggtcaacttcgac
ctgccgatcgtcgccgaggactacgtccaccgcatcggccgtaccggtcgcgccggggcc
agcggccaggcgctgtcgctggtctgcgccgatgaagtgcagcagttggcggccatcgaa
acgctgatcggccaactgctgacgcgcagcgaagaggacggtttcgaggccgagcaccgg
gtgccgcagaccacccttggcggccagttggtgaagaagccgaagaagcccaagcaaccc
aaggtccccgagggcaagcccggcaaggtccacctgggcaacctgctggacgacaagccg
caggtgaaggcggtgcgcaaggcgccgggcttcgccaaggcgccggcaggcaagaagccg
agcgcgcccaagggcaaggggcgctga
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