Pseudomonas knackmussii: PKB_0991
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Entry
PKB_0991 CDS
T03081
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase rhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PKB_0991 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkc03019
]
PKB_0991 (rhlB)
Enzymes [BR:
pkc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PKB_0991 (rhlB)
Messenger RNA biogenesis [BR:
pkc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PKB_0991 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
CDF82357
UniProt:
A0A024HCX1
LinkDB
All DBs
Position
complement(1034072..1035595)
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AA seq
507 aa
AA seq
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MLKALKKIFGKGEGEQPAATPTPAAAPAAASQDAEQRPRKPRAPRPEGERTEKAPRAPKS
DKPRGERQNKAEQADKPREKTEKVEKTEKPRRERKPKAPVVDNWKLEDFVVEPAEGKTRF
HDFNLDPRLMHAIHDLGFPYCTPIQAQVLGFTLKGQDAIGRAQTGTGKTAAFLISIITQL
LQTPPPKERYMGEPRALIIAPTRELVVQIAKDAVGLAKYTGLNVMSFVGGMDFDKQLKTL
ESRFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPFKG
ERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNL
IAQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIKVLEGFREGKIRVL
VATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGSTGTSISFAGEDDAFALPP
IEELLGRKINCEMPPTELLKPVPRKHH
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcactcaagaaaatcttcggcaagggcgagggcgagcagcccgccgccacg
ccaacccccgccgcagcccccgccgctgccagtcaggacgccgaacagcgtccgcgcaaa
ccccgcgctccccgccccgaaggcgaacgtaccgagaaggcgccgcgagccccgaaatcc
gacaagccgcgtggcgaacgccagaacaaggccgagcaagccgacaagccgcgcgaaaag
accgaaaaggtcgagaaaaccgaaaagccgcgccgcgagcgcaagcccaaggccccggtg
gtggataactggaagctggaagatttcgtagtcgagccggccgaaggcaagacccgcttc
cacgacttcaacctcgacccgcgtctgatgcacgccatccacgacctgggcttcccctac
tgcacgccgatccaggcgcaggtgctgggcttcaccctcaagggccaggacgccatcggc
cgcgcccagaccggcaccggcaagaccgccgcgttcctcatctcgatcatcacccagctg
ctgcagaccccgccgccgaaagagcgctacatgggcgagccgcgcgcgctgatcatcgcg
ccgacccgcgagctggtggtgcagatcgccaaggacgcggtaggcctggccaagtacacc
ggcctgaacgtcatgagcttcgtcggtggcatggacttcgacaaacagctcaagaccctc
gaatcgcgcttctgcgacatcctcgtggccacccccggccgcctgctggacttcaaccag
cgcggcgaggtgcacctggacatggtcgaggtgatggtgctggacgaagccgaccgcatg
ctcgacatgggcttcatcccgcaggtccgccagatcatccgccagaccccgttcaagggc
gagcgccagaccctgctgttctcggccaccttcaccgatgacgtgatgaatctggccaag
cagtggaccgtcgacccggcgatcgtcgagatcgaaccggagaacgtcgccagcgacacc
gtcgagcagcacgtctacgccgtcgccggcagcgacaagtacaagctgctgtacaacctg
atcgcgcagaacgactggacccgcgtgatggtcttcgccaaccgcaaggacgaagtccgt
cgcatcgaggaacggctgaccaaggacggcatcagcgccgcccagatgtccggcgacgtg
ccgcagcacaagcgcatcaaggtcctggaaggcttccgcgagggcaagatccgcgtcctg
gtcgccaccgacgtcgccggccgcggcatccacgtcgacggcatcagccacgtgatcaac
ttcaccctgccggaagatccggacgactacgtgcaccgcatcggccgtaccggccgcgcc
ggcagcaccggcacctcgatcagcttcgccggcgaggacgacgccttcgccctgccgccg
atcgaagagctgctcggccgcaagatcaattgcgagatgccgcccaccgagctgctcaag
ccggtaccgcgcaagcaccactga
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