Pseudomonas knackmussii: PKB_1233
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Entry
PKB_1233 CDS
T03081
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc03030
DNA replication
pkc03430
Mismatch repair
pkc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PKB_1233 (dnaE)
03430 Mismatch repair
PKB_1233 (dnaE)
03440 Homologous recombination
PKB_1233 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pkc03032
]
PKB_1233 (dnaE)
03400 DNA repair and recombination proteins [BR:
pkc03400
]
PKB_1233 (dnaE)
Enzymes [BR:
pkc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PKB_1233 (dnaE)
DNA replication proteins [BR:
pkc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PKB_1233 (dnaE)
DNA repair and recombination proteins [BR:
pkc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PKB_1233 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
CDF82598
UniProt:
A0A024HDT1
LinkDB
All DBs
Position
1295825..1299355
Genome browser
AA seq
1176 aa
AA seq
DB search
MTASFVHLRLHTEYSLVDGLVRVKPLCKAVAGAGMPAVAVTDQSNMCSLVKFYKTAMGAG
IKPICGADIWLANRDDEGPLSRLSLLAMNAKGYRNLTELISRGWQHGQRNGEIIIEREWV
REAAEGLIALSAAKEGEIGHALLNGENDLADSLLAEWMEVFPDRFYLEVQRTSRAYDEEH
LHAAVALAERSGAPLVATNDVRFIKPEDFEAHETRVCIGEGRALDDPRRSRNFSDQQYLK
TPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPNFPIPFEGMDINEYLRHVSYEG
LEERLAVLWPKETTPDYEAKRQIYIDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNNGVP
VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDY
VAGAYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADKLSKMIPFEVGMTLEKAYEQ
EEMLRDFLKSDEEAQEIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDEEGAGL
VTQYDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIIHRIQRKNGDDNLVDIDRIPLDDKKT
YDLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKH
GREEISYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKK
PEEMAKQRGGFIEGCANNGIDANLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKT
HWAAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVDDDNQIVYGLG
AIKGVGEGPVEAITECRNEGGPFKDLFDFCDRVDLKRINKRTLEALIRAGALDRLGPYFH
DEVKAYQANVDRNRAVLLASMEEAIKAAEQTSRSHDSGHMDLFGGLFAEPEADVYANHRK
AKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDTQTVAGLIVNL
RVMKNKRGDKMGFVTLDDRSGRIEASLFAEAFAANQGLLQTDAMVVIEGEVSQDDFSGGL
RLRAKRVMGLEEARTALAESLRVKVAADALKGDRLRWLAELCGRHRGNCPVTVDYSSSDA
RALLQFGEEWKIDPADSLIQALRDQFGRDNVFLNYR
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcctccttcgtccacctgcgtctgcataccgagtactccctggtcgacggcctg
gtccgggtcaagcccctgtgcaaggcggtggccggtgcgggcatgccggcggtggcggtc
accgaccagagcaacatgtgctcgctggtgaagttctacaagacggcaatgggcgccggg
atcaagccgatctgcggcgccgacatctggctggccaaccgcgacgacgaaggcccgctg
agccgcctgagcctgctggcgatgaacgccaagggctaccgcaatctcaccgagctcatc
tcccgcggctggcagcacggccagcgcaacggtgagatcatcatcgaacgcgaatgggtc
cgcgaggctgccgaaggcctgatcgccctgtccgcagcgaaagagggcgagatcggtcat
gccctgctgaacggcgagaacgacctggccgactcgctgctcgccgagtggatggaagtc
ttccccgatcgcttctacctggaagtgcagcgcaccagccgggcatacgacgaagaacac
ctgcatgccgccgtggccctggccgaacgcagcggcgcgccgctggtcgccaccaacgac
gtgcgtttcatcaagcccgaggacttcgaggcccacgagacccgcgtatgcatcggtgaa
ggccgcgcactggacgatccgcgccgctcgcgcaacttctccgaccagcagtacctgaag
accccggcggaaatggccgagctgttcagcgacctgcccgaggcgctggaaaacaccgtc
gagatcgccaagcgctgcaacatcgaagtgcagctgggcaaatacttcctgcccaacttc
ccgatccccttcgaagggatggacatcaacgaataccttcgccatgtctcctacgagggc
ctggaggagcgcctggcggtgctctggccgaaggagaccacgccggactacgaagccaag
cggcagatctacatcgaccgcctggagttcgagctgggcaccatcatccagatgggcttc
cccggctacttcctgatcgtgatggacttcatcaagtgggccaagaacaacggcgtgccc
gtgggccccggccggggctcgggtgccggctcgctggtagcctacgtgctgaagatcacc
gatctcgatccgctggcctatgacctgctgttcgagcgcttcctcaaccccgaacgtatc
tccatgcccgacttcgacgtggacttctgcatggagggccgcgaccgggtaatcgactac
gtggccggtgcctacgggcgcaacgcggtgagccagatcatcaccttcggctccatggct
gccaaggcggtggtgcgcgacgtggcgcgggtgcagggcaagtcctacgggctggccgac
aaactgtcgaaaatgattcctttcgaagtcggcatgaccctggaaaaggcctacgagcag
gaagagatgctccgcgacttcctcaagtccgacgaggaagcccaggaaatctgggacatg
gccctgaagctcgaaggcatcacccgcggtaccggcaagcacgccggcggcgtggtgatc
gcgccgaccaaactcaccgacttcgcgcccatcgcttgcgatgaagagggtgccggcctg
gtgacccagtacgacaaggacgacgtggaggccgccggcctggtgaagttcgacttcctc
ggcctgcgtacgctgaccatcatcaagtgggcgatggagatcatccaccgcatccagcgc
aagaacggcgacgacaacctggtcgacatcgaccgtatcccgctggacgacaagaagacc
tacgacctgttgcagaaggcggaaaccaccgcggtcttccagcttgaatcgcgcggcatg
aaggagctgatcaagaagctcaagccggactgcctggaagacctgatcgcactggtggcg
ctgttccgtcccggtccgctgcagtcgggcatggtggacgacttcatcaaccgtaagcac
ggtcgcgaggaaatctcctatccgcacccggactaccagtacgcgggcctcgagccggtc
ctgaagccgacctacggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtc
atggccggctacaccctcggcggcgcggacatgctgcgtcgagccatgggcaagaagaag
cccgaggagatggccaagcagcgcggcggcttcatcgaaggctgcgccaacaacggcatc
gatgcgaacctcgcgggcaacatcttcgacctggtggaaaagttcgccggctatggcttc
aacaagtcgcactcggccgcctatggcctggtctcctaccagaccgcctggctgaagacc
cactgggcagcccccttcatggctgcggtactcaccgcggatatgcagaacaccgacaag
gtggtgacgctgatcgaagaatgccggcacatgaagctgcgcatcgtggcgccggatgtg
aacaactccgaattccgcttcaccgtcgacgacgacaaccagatcgtctacggcctcggc
gcgatcaagggcgtcggtgaaggtccggtggaagccatcaccgaatgccgcaatgagggt
gggccgttcaaggacctgttcgacttctgcgaccgcgtcgacctcaagcggatcaacaaa
cgaactctcgaggcgctgatccgcgccggtgcgctggatcgcctgggcccgtacttccat
gacgaggtcaaggcctaccaggccaacgtcgaccgcaaccgcgcggtgttgctggcgtcc
atggaggaagccatcaaggccgccgagcaaacctcgcgcagccatgacagcggccacatg
gacctgttcggcggactcttcgccgagccggaagcggacgtctatgccaaccatcgcaag
gccaaggagctgaccctcaaggagcggctgaagggcgagaaagacaccctcggcctctac
cttaccggtcacccgatcgacgagtacgaaggtgaggtccgccgcttcgcccgccagcgc
atcgtcgagctcaagcccgcgcgcgacacccagacggtggccggcctgatcgtcaacctg
cgagtgatgaagaacaagcgcggcgacaagatgggcttcgtcaccctcgacgaccgttcc
ggacgcatcgaagcctcgctgttcgccgaggccttcgccgccaaccagggcctgctgcag
accgacgccatggtggtgatcgagggcgaagtaagccaggacgacttctccggcggcctg
cgcctgcgcgccaagcgcgtcatgggcctcgaagaggcgcgcactgcgctggccgaaagc
ctgcgggtgaaggtcgccgccgatgccctcaagggcgaccgcctgcgctggctggccgag
ctttgcgggcgtcatcgcggcaactgcccggtgaccgtcgactacagttccagcgacgcg
cgcgccctgttgcagttcggcgaggaatggaagatcgacccggccgacagtctgattcag
gcattgcgtgaccagttcggacgagacaacgtcttcctcaactaccgctag
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