Pseudomonas knackmussii: PKB_1786
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Entry
PKB_1786 CDS
T03081
Symbol
dapF1
Name
(GenBank) Diaminopimelate epimerase 1
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc00300
Lysine biosynthesis
pkc00470
D-Amino acid metabolism
pkc01100
Metabolic pathways
pkc01110
Biosynthesis of secondary metabolites
pkc01120
Microbial metabolism in diverse environments
pkc01230
Biosynthesis of amino acids
Module
pkc_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PKB_1786 (dapF1)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PKB_1786 (dapF1)
Enzymes [BR:
pkc01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
PKB_1786 (dapF1)
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Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
CDF83144
UniProt:
A0A024HEV9
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All DBs
Position
complement(1834579..1835412)
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AA seq
277 aa
AA seq
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MRFLKYHALGNDYLVYAGSEPFPFNDAAVVRICDRHRGLGSDGILVPEGRDAGAFGLRIL
NPDGSLAERSGNGLRIFSRYLWDQGLVDEQPFRIVTVAGPVTSQVFDQGREVEVDMGHAQ
FASAAIPVRVDTPQALDIPLQLDGHDLRLNAVSMGNPHCVVFVEHTEAQLAKTLGPLLES
HALFPNRTNVQFVQVLGRNDLRVEIWERGAGYTLASGTSSCAAAAVARLKGYCDSEITVH
LAGGLLRIRVEDDYRVHMRGAVQRIGELHLDAECLRD
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttcctcaagtaccacgccctgggcaacgactacctggtctacgccggcagcgag
cccttccccttcaatgacgcagcggtcgtgcgcatctgcgaccgccatcgcggcctgggc
tcggacggcatcctcgtccccgagggccgcgacgccggcgccttcggcctgcgcatcctc
aatcccgacggctcgctcgccgagcgcagcggcaacggcctgcgcatcttctcccgctac
ctgtgggaccagggtctggtggatgaacagccgttccgcatcgtcaccgtggccgggccg
gtcaccagccaggtgttcgaccagggccgcgaggtcgaggtggacatgggccacgcgcag
ttcgccagcgccgccatcccggtgcgggtcgacaccccgcaggcgctggacattccgctg
caactggacggccacgacctgcgcctgaacgcggtctccatgggcaatccgcattgcgtg
gtcttcgtcgaacacaccgaggcgcaactggcgaaaacactggggccgctgctggaatcc
catgcgctgttccccaaccgcaccaacgtgcagttcgtccaggtgctcgggcgcaacgac
ctgcgcgtggaaatctgggagcgcggcgccggctacaccctcgcttcgggcaccagcagc
tgcgcggcggcggccgtggcccggctgaaaggctactgcgacagcgagattaccgttcac
ctggccggcggcctgctgcgcatccgggtcgaggacgactatcgcgtgcatatgcgtggc
gccgtgcagcgcatcggtgaactgcatctggatgcggagtgcctgcgtgactga
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