Pseudomonas knackmussii: PKB_2340
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Entry
PKB_2340 CDS
T03081
Name
(GenBank) G:T/U mismatch-specific DNA glycosylase
KO
K03649
double-stranded uracil-DNA glycosylase [EC:
3.2.2.28
]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PKB_2340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkc03400
]
PKB_2340
Enzymes [BR:
pkc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.28 double-stranded uracil-DNA glycosylase
PKB_2340
DNA repair and recombination proteins [BR:
pkc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PKB_2340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
CDF83687
UniProt:
A0A024HGQ6
LinkDB
All DBs
Position
complement(2441477..2441998)
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AA seq
173 aa
AA seq
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MDARLEDIVAEHLAVLFCGINPGLKAAAQGHHFAGRSNRFWRTLHRAGFTPEEMRPEQDR
TLLQYRCGLTAVVERPTASADQLSRQEFAAAAQAFEAKVRRYAPRFLAFLGKPAYCALSG
QRDVAWGLQATRFGGAAVWVLPNPSGRNLAFSLDQLVAAYRQLHLAAFASGPA
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
gtggacgcaagactggaagacatcgtcgccgagcacctggcagtgctcttctgcggcatc
aatcccgggctcaaggcggcggcccaggggcatcacttcgccggaaggagcaatcgcttc
tggcgcaccctgcaccgggccggtttcacgcccgaggaaatgcgcccggaacaggaccgg
acgctcctgcaataccgttgcgggctgacggccgtggtcgagcgaccaacggcgagcgcc
gatcagctcagccggcaggaattcgctgcggcggcgcaagctttcgaagccaaggtccga
cgctatgccccgcgcttcctggcctttctcggcaagccggcctattgcgccttgtccggc
cagcgcgatgtcgcctgggggctgcaagcgacccgcttcggcggtgcggcagtctgggtc
ctgcccaacccgagcgggcgcaacctggccttctcgctcgatcagctggtggccgcgtac
cgccagctccatctggcggcgttcgcgagcgggccggcctga
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integrated database retrieval system