Pseudomonas knackmussii: PKB_3787
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Entry
PKB_3787 CDS
T03081
Symbol
fadB
Name
(GenBank) Fatty acid oxidation complex subunit alpha
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc00071
Fatty acid degradation
pkc00280
Valine, leucine and isoleucine degradation
pkc00310
Lysine degradation
pkc00362
Benzoate degradation
pkc00380
Tryptophan metabolism
pkc00410
beta-Alanine metabolism
pkc00640
Propanoate metabolism
pkc00650
Butanoate metabolism
pkc00907
Pinene, camphor and geraniol degradation
pkc00930
Caprolactam degradation
pkc01100
Metabolic pathways
pkc01110
Biosynthesis of secondary metabolites
pkc01120
Microbial metabolism in diverse environments
pkc01200
Carbon metabolism
pkc01212
Fatty acid metabolism
Module
pkc_M00087
beta-Oxidation
pkc_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
PKB_3787 (fadB)
00650 Butanoate metabolism
PKB_3787 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
PKB_3787 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
PKB_3787 (fadB)
00310 Lysine degradation
PKB_3787 (fadB)
00380 Tryptophan metabolism
PKB_3787 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
PKB_3787 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
PKB_3787 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
PKB_3787 (fadB)
00930 Caprolactam degradation
PKB_3787 (fadB)
Enzymes [BR:
pkc01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
PKB_3787 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
PKB_3787 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
PKB_3787 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
PKB_3787 (fadB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
CDF85125
UniProt:
A0A024HJD0
LinkDB
All DBs
Position
complement(3964802..3966949)
Genome browser
AA seq
715 aa
AA seq
DB search
MIYEGKAITVKALESGIVELKFDLKGESVNKFNRLTLNELRQAVDTIKADASVKGVIVSS
AKAVFIVGADITEFVDNFKLPDEELLAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLE
MCLAADFRVMSATAKIGLPEVKLGIYPGFGGTVRLPRIIGCDNAVEWIASGKENKAEDAL
KVGAVDAVVAPEQLQAAALDLVKRAISGELDHKARRQPKLEKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKSIQKAANFGRDKALEIEAQGFVKLAKTSVAESLIGLFLNDQDL
KKKAKQYDEIAKDVKLAAVLGAGIMGGGIAYQSASKGTPILMKDIREEGIQMGLNEASKL
LGKRVEKGRMTPAKMAEALNAIRPTMSYGDFGNVDIVVEAVVENPKVKQIVLAEVEGVVK
EDAVLASNTSTISINLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDVAVATTVA
YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFSKLLGFGVDFVRIDKIMEKFGWPMGPAYL
SDVVGIDTGHHGRDVMAEGFPDRMAVEGKTAVDVMYDANRLGQKNGKGFYAYETDKRGKP
KKVSDPQAYELLKAIVVEQRELTDEDIINYMMIPLCLETVRCLEDGIVETAAEADMGLIY
GIGFPPFRGGALRYIDSIGVAEFVALADKYADLGPLYHPTAKLREMAKNGQKFFG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatttacgaaggtaaagccatcacggttaaggctcttgagagcggcatcgtcgagctg
aagttcgacctcaagggcgagtccgtcaacaagttcaaccggctcaccctgaacgaactg
cgccaagcagtcgacaccatcaaggccgatgcgtccgtcaagggcgtgatcgtgagcagc
gccaaggcggtgttcatcgtcggcgccgacatcaccgaattcgtcgacaacttcaagctg
ccggacgaagaactgctggccggcaacctcgaagccaacaagatcttcagcgatttcgaa
gacctgaacgtccccaccgttgccgcgatcaacggcatcgccctgggcggcggtctggaa
atgtgcctggcagcggacttccgcgtcatgagcgccaccgccaagatcggcctgccggaa
gtcaagctgggcatctacccgggcttcggcggtaccgttcgtctgccgcgcatcatcggc
tgcgacaatgctgtcgagtggatcgcctcgggcaaggaaaacaaggctgaagacgcactg
aaagtcggcgccgtcgacgccgtggtcgctccggagcagctgcaagccgccgcgctggac
ctggtcaagcgcgccatctccggcgagctggatcacaaggcccgccgccagccgaagctc
gagaagctgaagctgaacgccatcgagcagatgatggccttcgagaccgccaagggcttc
gtcgcaggccaggccggcccgaactacccggctccggtcgaagccatcaagtcgatccag
aaagccgccaacttcggtcgtgacaaggcgctggaaatcgaagcccagggcttcgtgaaa
ctggccaagacctcggtcgccgagagcctgatcggtctgttcctgaacgaccaggacctg
aagaagaaggccaagcagtacgacgagatcgccaaggacgtgaaactggccgccgtactg
ggcgccggcatcatgggcggcggtatcgcctaccagtccgcctccaagggcactccgatc
ctgatgaaggatatccgcgaagagggtatccagatgggtctgaacgaggcgtccaagctg
ctcggcaagcgcgtcgagaagggccgcatgaccccggccaagatggccgaggcgctgaac
gccattcgcccgaccatgtcctacggcgacttcggcaacgtcgacatcgtcgtcgaagcc
gtggtcgagaacccgaaggtcaagcagatcgtgctggccgaagttgaaggcgtggtgaag
gaagatgcggttctcgcgtcgaacacttcgaccatctccatcaacctgctggcaaaagcg
ctgaagcgtccggaaaacttcgtcggcatgcacttcttcaacccggtgcacatgatgccg
ctggtggaagtgatccgtggcgagaagtccagcgacgtggccgtggccaccaccgttgcc
tacgccaagaaaatgggcaagaacccgatcgtggtcaacgactgccccggcttcctggtc
aaccgcgtgctgttcccgtacttcggcggcttctccaagctgctgggcttcggcgtcgac
ttcgtgcgcatcgacaagatcatggagaaattcggctggcccatgggcccggcctacctc
tccgacgtcgtcggcatcgacaccggccaccacggccgcgacgtgatggccgaaggcttc
ccggatcgcatggccgttgaaggcaagaccgctgtcgacgtcatgtacgacgccaaccgt
ctgggccagaagaacggcaagggcttctacgcctacgagaccgacaagcgcggcaagccg
aagaaggtttccgatccgcaggcctacgagctgctgaaggccatcgtcgtcgagcagcgc
gagctgaccgacgaggacatcatcaactacatgatgatcccgctgtgcctggaaaccgtg
cgctgcctggaagacggcatcgtcgaaaccgctgccgaggccgacatgggcctgatctac
ggcatcggcttcccgcccttccgtgggggtgccctgcgttacatcgattccatcggtgta
gccgaattcgtcgccctggccgacaagtacgccgatctgggtccgctgtaccacccgacc
gcgaagctgcgtgaaatggccaagaacggccagaagttcttcggttga
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