Pseudomonas knackmussii: PKB_3900
Help
Entry
PKB_3900 CDS
T03081
Symbol
himD
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
pkc
Pseudomonas knackmussii
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pkc03032
]
PKB_3900 (himD)
03036 Chromosome and associated proteins [BR:
pkc03036
]
PKB_3900 (himD)
03400 DNA repair and recombination proteins [BR:
pkc03400
]
PKB_3900 (himD)
DNA replication proteins [BR:
pkc03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PKB_3900 (himD)
Chromosome and associated proteins [BR:
pkc03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
PKB_3900 (himD)
DNA repair and recombination proteins [BR:
pkc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
PKB_3900 (himD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-DNA_bdg
HU-CCDC81_euk_1
HU-CCDC81_euk_2
CATASP
Motif
Other DBs
NCBI-ProteinID:
CDF85229
UniProt:
A0A024HKQ1
LinkDB
All DBs
Position
complement(4090903..4091187)
Genome browser
AA seq
94 aa
AA seq
DB search
MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV
GRNPKTGESVRLDGKFVPHFKPGKELRDRVNEPE
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagtcggagttgatcgagagaatcgtcacccatcaggggcagctttccgcaaag
gatgtggaactggcgatcaagaccatgctcgagcagatgtcccaggctttggcgacaggg
gatcgcatcgagattcgtgggtttggcagcttctctcttcattaccgcgccccgcgcgtt
ggccgtaaccccaagacaggcgaatccgtacgcctggatggcaagttcgtgccgcatttc
aagcccggcaaggagctgcgtgatcgggtcaacgagcccgagtaa
DBGET
integrated database retrieval system
