Pseudomonas knackmussii: PKB_4063
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Entry
PKB_4063 CDS
T03081
Name
(GenBank) ATP-dependent RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pkc
Pseudomonas knackmussii
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pkc03009
]
PKB_4063
Enzymes [BR:
pkc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PKB_4063
Ribosome biogenesis [BR:
pkc03009
]
Prokaryotic type
rRNA helicases
PKB_4063
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
Terminase_6N
AAA_22
CdhD
Motif
Other DBs
NCBI-ProteinID:
CDF85392
UniProt:
A0A024HLI6
LinkDB
All DBs
Position
complement(4273906..4275222)
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AA seq
438 aa
AA seq
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MFAQFALHERLLKALDSLSFTEPTAVQAAAIPKALEGRDLRVTAQTGSGKTAAFLLPLLH
RLLAEEKPKSGARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRK
NPEIIIGTPGRLNEQFNAGNLPLNDVEVLVLDEADRMLDMGFSEDVLKLAAQCPAQRQTL
LFSATTGSGLREMIETVLREPEHLLLNQVSELNEEVSQQVVLVDEGEHKEAVLFWLLQNE
TYEKAIVFTNTRVQADRLTGRLIAAGHKVFVLHGEKDQKDRKLAIERLKQGAVKILVATD
VAARGLDVDGLDLVINYDMPRKGDEYVHRIGRTGRAGAAGVAISLVAHTDWNLMSSIERY
LKLRFEQRVIPGLKASYKGPKKVKASGKAAGTKKKKTDAGKKAGAKPAAKRKPAAKPKAP
LASSDGMAPLKRKKPAAE
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgcccaattcgccctccatgaacgcctgctcaaggcgctcgacagcctgtccttc
accgagccgaccgccgtgcaggccgccgccatcccgaaggcgctggagggccgcgacctg
cgcgtgacggcgcagaccggcagcggcaagactgccgccttcctgctgccgttgctgcat
cgcctgctcgccgaggaaaagcccaagagcggcgcccgcgcgctgatcctgctgccgacc
cgcgagctggcccagcagaccctcaaggaagtcgagcgcttcgcccagttcaccttcatc
aaggcctgcctgatcaccgggggcgaggacttcaaggtgcagggcgcgcgcctgcgcaag
aacccggaaatcatcattggcacccctggccggctgaacgagcagttcaacgccggcaac
ctgccgctgaacgatgtcgaggtgctggtgctcgatgaagccgaccgcatgctcgacatg
ggcttctccgaggacgtgctcaagctcgccgcgcaatgcccggcgcagcgccagaccctg
ctgttctccgccaccaccggcagcggcctgcgcgagatgatcgaaaccgtgctgcgcgag
ccggagcacctgctgctgaaccaggtcagcgagctcaacgaagaggtgagccagcaggtc
gtgctggtcgacgagggcgagcacaaggaagccgtgctgttctggctgctgcagaacgag
acctacgagaaggccatcgtcttcaccaacacccgcgtccaggccgaccgcctgaccggc
cggctgatcgccgccgggcacaaggtcttcgtcctgcacggcgagaaggaccagaaggac
cgcaagctggcgatcgagcgcctgaagcagggcgcggtgaagatcctggtcgccaccgac
gtcgccgcccgcggcctggacgtcgacggcctggacctggtgatcaactacgacatgccg
cgcaagggcgacgagtacgtgcaccgtatcggccgcaccggtcgcgcgggcgctgccggt
gtcgccatttcgctggtcgcgcacaccgactggaacctgatgtcgagcatcgagcgctac
ctcaagctgcgcttcgagcaacgcgtcatcccgggcctgaaggccagctacaaggggccg
aagaaggtcaaggcctcgggcaaggctgccgggaccaagaagaaaaagaccgacgctggc
aagaaggccggcgccaagcccgccgccaagcgcaagccggcagccaaaccgaaggcaccg
ctggccagcagcgacggcatggcgccgctcaagcgcaagaagccggcggcggaataa
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