Pseudomonas knackmussii: PKB_4092
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Entry
PKB_4092 CDS
T03081
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PKB_4092 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkc03019
]
PKB_4092 (recQ)
03400 DNA repair and recombination proteins [BR:
pkc03400
]
PKB_4092 (recQ)
Enzymes [BR:
pkc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PKB_4092 (recQ)
Messenger RNA biogenesis [BR:
pkc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PKB_4092 (recQ)
DNA repair and recombination proteins [BR:
pkc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PKB_4092 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
Sigma70_r4_2
ResIII
HTH_20
HTH_23
HTH_29
DUF433
GerE
HTH_7
PAX
Motif
Other DBs
NCBI-ProteinID:
CDF85421
UniProt:
A0A024HKL2
LinkDB
All DBs
Position
complement(4299557..4301695)
Genome browser
AA seq
712 aa
AA seq
DB search
MLDQAQRILKDVFGYDAFRGNQARIIERVAGGGDALVLMPTGGGKSLCFQVPALLREGLT
VVVSPLIALMEDQVATLDELGVPVAALNSSLSPEAQRDIAARLERGEIKLLYLAPERLVQ
PRMLAFLQRLNIGLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPDVPRIALTATADMRT
REEMIQRLHLQNAEQFLSSFDRPNIFYRIVPKEQPRKQLLGFLSERRGDAGIVYCLSRKK
VEEVAEFLSGQGFPALPYHAGLSNELRAFHQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLLLRQMMQNSEGDERHKRIERHK
LEAMLALCEETRCRRQALLAYFDEQMANPCGHCDNCVDGVETWDATEPARQALSAIYRSG
QRYGVGHLVDILLGKDTEKVRSLGHQHLAVFGIGKARAEDEWRTLFRQLVARGFADVDLE
GFGSLRLTEACRPLLRGEETLALRRDPKPQRSKSSSSGGASPASQLVRAEERQMWEALRT
LRRKLAEEHAVPPYVIFPDATLLEMLRSQPRSLSDMAQVSGVGARKLERYGQAFLDVLTD
SPAAPATPPADLRHELVSLARAGMTPAQIARQLDCTEKNVYSLLAEAITAQQLSLEEALD
LPEALLADVQDAFLEEDGELPPVAAIAERFAGRVPQGVLYCVRAALQAELEA
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaccaggcacagcgcattctcaaagacgtattcggctacgacgccttccgcggc
aaccaggcgcgcatcatcgagcgcgtggccggcggtggcgatgcgctggtgctgatgccc
accggcggcggcaagtcgctgtgcttccaggtcccggcgctgctgcgcgagggcctgacg
gtggtggtttcgccgctgatcgcgctgatggaagaccaggtcgccaccctcgacgagctg
ggcgtgccggtggcggcgctgaactcctcgctcagccccgaggcgcagcgcgacatcgcc
gcgcgcctggaacgtggcgagatcaagctgctgtaccttgcgcccgaacgcctggtgcag
ccgcgcatgctggccttcctgcagcgccttaacatcggcctgttcgccatcgacgaagcg
cattgcgtgtcgcagtggggccacgacttccgtcccgaatacctgcaactgggccagctc
gccgagctgttcccggacgtgccgcgcatcgccctgaccgccacggcggacatgcgcacc
cgcgaggagatgatccagcgcctgcacctgcagaacgccgaacagttcctctccagcttc
gaccggccgaacatcttctaccgcatcgtgcccaaggagcagccgcgcaagcagttgctg
ggcttcctcagcgaacgccgtggcgacgccggcatcgtctactgcctgtcgcgcaagaag
gtcgaggaggtcgccgagttcctctccggccagggcttcccggcgctgccgtaccacgcc
gggctgtccaacgagctgcgcgcgttccaccagaaacgcttcctcaacgaagaggggctg
atcatggtggcgaccatcgccttcggcatgggcatcgacaagccgaacgttcgcttcgtc
gcccatctcgacctgcccaagagcctggaggcgtactaccaggaaaccggccgcgccggc
cgtgacggcctgccggcggatgcctggatggcctacggcctgcaggacgtgctgttgctg
cggcagatgatgcagaactccgagggcgacgaacgccacaagcgtatcgagcggcacaag
ctcgaagccatgctggcgctctgcgaggaaacgcgctgccggcgccaggcgcttctggcc
tatttcgacgagcagatggccaacccctgcgggcactgcgacaactgcgtcgacggcgtc
gagacctgggatgccaccgagcctgcccgccaggcgctgtcggccatctaccgcagcggc
cagcgctacggcgtcggccacctggtggacatcctgctcggcaaggataccgagaaggtg
cgcagcctcggccaccagcacctggcggtgttcggcatcggcaaggcgcgcgccgaagac
gaatggcggaccctgttccgccagttggtcgcccgtggattcgccgacgtggacctggaa
ggcttcggcagcctgcgcctgaccgaggcttgccgcccgctgctgcgcggcgaggagacg
ctggccctgcgccgcgatccgaagccgcaacggagcaagtcttcgtcctccggcggcgcc
agcccggccagccagctcgtgcgggccgaggaacgccagatgtgggaggccctgcgcacc
ctgcgacgcaagctcgccgaggagcatgcggtgccgccgtacgtcatcttccccgatgcc
accctgctggaaatgctgcgcagccagccgcgctcgttgtcggacatggcccaggtcagc
ggcgtcggcgcgcgcaagctggagcgctacggccaggccttcctcgacgtgctcaccgat
tccccggcggcgcccgccacgccgccggcggacctgcgccacgagctggtcagcctggcc
cgcgccggcatgactccggcgcagatcgcccgccagctggattgcaccgagaaaaatgtc
tacagcctgctggccgaggccatcaccgcccagcagctgagcctggaggaagccctcgac
ctgcctgaggcgctgctggccgacgtgcaggacgctttcctcgaggaagacggcgagctg
ccgccggtggctgcgatcgccgagcgtttcgccggtcgtgtgccccagggcgtgctgtac
tgcgtccgcgctgcgctgcaggccgagctggaagcctga
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