Pseudomonas knackmussii: PKB_4218
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Entry
PKB_4218 CDS
T03081
Symbol
ygdH
Name
(GenBank) LOG family protein ygdH
KO
K06966
pyrimidine/purine-5'-nucleotide nucleosidase [EC:
3.2.2.10
3.2.2.-]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc00230
Purine metabolism
pkc00240
Pyrimidine metabolism
pkc01100
Metabolic pathways
pkc01232
Nucleotide metabolism
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09100 Metabolism
09104 Nucleotide metabolism
00230 Purine metabolism
PKB_4218 (ygdH)
00240 Pyrimidine metabolism
PKB_4218 (ygdH)
Enzymes [BR:
pkc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.10 pyrimidine-5'-nucleotide nucleosidase
PKB_4218 (ygdH)
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Gene cluster
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Motif
Pfam:
PpnN_C
DUF4478
Lysine_decarbox
LDcluster4
Motif
Other DBs
NCBI-ProteinID:
CDF85543
UniProt:
A0A024HM88
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All DBs
Position
4424443..4425825
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AA seq
460 aa
AA seq
DB search
MSHRPTINASVSPKGTLETLSQREVAQLSEAGSGNLYQLFRQCVLAILNTGARIDNAKTI
LDAYRDFEVRIHQQDRGVRLELLNAPADAFVDGEMIAGTREMLFSALRDIVYTASELENQ
RVDLNSSAGITDYVFHLLRNARTLRAGVEPKIVVCWGGHSISTEEYKYTKKVGHELGLRN
LDVCTGCGPGVMKGPMKGATIGHAKQRHHGGRYLGLTEPGIIAAEAPNPIVNELVILPDI
EKRLEAFVRVGHGIIIFPGGVGTAEEFLYLLGILMHPDNQELPFPLLLTGPKSAAPYFEQ
LHAFVGATLGEAAQRRYRILIDDPAEVAREMAKGLKEVKQFRRERNDAFHFNWLLKIDER
FQRPFDPTHENMAALQLTKDIPPHKLAANLRRAFSGIVAGNVKENGVRLIEEHGPYEIHG
DHQVMKPLDDLLQAFVKQHRMKLPGGAAYKPCYRVVGSGA
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagacccaccatcaatgcctcggtcagccccaagggcaccctcgaaaccctg
tcccagcgcgaagtggcgcaactcagcgaagccggctcgggcaacctctaccagctcttc
cgccagtgcgtgctggcgatcctcaacaccggcgctcgtatcgacaacgccaagaccatc
ctcgacgcctaccgcgacttcgaggtccgcatccaccagcaggaccgtggcgtgcgcctg
gaactgctgaacgcgccggccgacgccttcgtcgatggcgagatgatcgccggcacccgc
gaaatgctcttcagcgcgctgcgcgacatcgtctacaccgccagcgagctggagaaccag
cgcgtcgacctgaacagctcggcgggcatcaccgactacgtcttccacctgctgcgcaac
gcccgcaccctgcgcgccggcgtcgagccgaagatcgtcgtgtgctggggcggccactcc
atcagcaccgaggaatacaagtacaccaagaaggtcggccacgagctgggcctgcgtaac
ctcgacgtctgcaccggttgcggccccggcgtgatgaagggcccgatgaagggcgccacc
atcggccacgccaagcagcgccaccacggtggccgctacctgggcctgaccgagccgggg
atcatcgccgccgaggcgccgaacccgatcgtcaatgaactggtgatcctgccggacatc
gagaagcgcctggaagccttcgtccgcgtcggccacggcatcatcatcttccccggcggc
gtgggcacggccgaggagttcctctacctgctgggcatcctcatgcacccggacaaccag
gagctgcccttcccgctgctgctcactgggccgaagagcgccgcgccctacttcgaacag
ctgcatgccttcgtcggcgccaccctcggcgaagccgcgcagcgtcgctaccgcatcctc
atcgacgatccggcggaagtggcgcgggaaatggcaaaggggctcaaggaggtcaagcag
ttccgccgcgagcgcaacgacgccttccacttcaactggctgctgaagatcgacgagcgc
ttccagcgtccgttcgacccgacccacgagaacatggccgcgctgcagctcacgaaagac
ataccgccgcacaagctggccgccaacctgcgccgggccttctccggcatagtcgcgggc
aacgtgaaggagaacggcgtgcgcctgatcgaggagcacggcccctacgagatccacggc
gaccaccaggtgatgaagccgctggacgacctgctgcaggccttcgtcaagcaacaccgc
atgaagctgcccggcggcgcggcctacaagccgtgctaccgggtggtcggcagcggcgcc
tga
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