Pseudomonas knackmussii: PKB_4453
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Entry
PKB_4453 CDS
T03081
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PKB_4453 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkc03400
]
PKB_4453 (recD)
Enzymes [BR:
pkc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PKB_4453 (recD)
DNA repair and recombination proteins [BR:
pkc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PKB_4453 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
Helicase_RecD
AAA_22
SH3_13
UvrD-helicase
PhoH
HerA_C
SLFN-g3_helicase
T2SSE
NTPase_1
AAA_28
Mg_chelatase
nSTAND3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CDF85777
UniProt:
A0A024HML3
LinkDB
All DBs
Position
complement(4684819..4686852)
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AA seq
677 aa
AA seq
DB search
MSLEALLALLGQWAERGWLRELDRAFAAFLVEQAPDAEPRLILAAALASHQLGRGHVCLD
LEATLADSRFALSLPPDGELEGTPLTLPGELLDGLDLAGWQAALADPRLVGEGAGVTPLV
LAGPRLYLRRYWQYEREVRAGIDQRLARSKELRAALPVDALRQALDALFPKEEGAPADWQ
KLACALAAGNAFGIVTGGPGTGKTTTVVRLLALLQSLASARPLRIRLAAPTGKAAARLNE
SISGAVQKLELDGLPGGEGLREHIPTEVTTLHRLLGSRPDSRQFRHHPGNPLALDLLVVD
EASMVDLEMMSALLGALPAKARLILLGDKDQLASVEAGAVLGELCSRAREGHYQGATRDW
LEQVSGERIDDALLDAQGLALDQAVAMLRHSHRFSSASGIGQLAEAVNAGDVEASRTVWE
RGYADLARLALDAKDARSLRELVVDGGGRFFLNAAGREGVAPPQGYRHYLQLLRDGQPPL
HAGQDAFDTWAQRVLEAHGQFQVLCALRRGPWGVEGLNLRIAELLQGEGLIQASGPWYLG
RPLLVTRNDYGLGLMNGDIGITLALPREQDGELKWALRVAFADGKGGIKWVLPSRLQAVE
TVFAMTVHKSQGSEFTHAALVLPDALNPILTRELVYTGITRARSWFSLASAGRGQWVLES
AIQRRVQRASGLLEAGD
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcgaagcccttctcgcactgctcggccagtgggccgaacgcggctggctgcgc
gagttggaccgcgccttcgcggccttcctcgtcgagcaggcgcccgacgccgagccgcgg
ctgattctcgccgcggccctggccagccaccaactcggtcgcggccatgtgtgcctggac
ctggaggcgaccttggccgacagccgcttcgccttgtcgctgccgccggatggcgagctg
gaaggcacaccgctcacgttgccgggcgagctgctcgacggcctcgacctggccggctgg
caggccgcgctggccgacccgcgcctggtgggcgagggcgcaggcgtcacgccgctggtg
ctggccggtccgcgcctgtacctgcggcgctactggcaatacgaacgcgaagtgcgcgcc
ggtatcgaccagcgcctcgcgcgttcgaaagagttgcgcgcggccctgccggtcgatgca
ttgcgccaggcgctcgatgcgctcttcccgaaggaggaaggggctccggcggactggcag
aaactcgcttgcgcactggctgccggcaacgccttcggcatcgtcacgggcggcccgggc
accggcaagaccaccacggtggtgcgcctgctggcgctgctgcagagcctggcgtcggcg
cgcccgctgcgcatccgcctggccgcgccgaccggcaaggcggcggcgcggctgaacgaa
tccatctccggggcagtgcaaaaacttgaactcgatggcctacccggcggcgaagggctg
cgcgaacacattcccacggaagtgaccacgctgcaccgcctgctcggcagccggccggac
agtcgccagttccgccaccaccccggcaacccgctggcgctggacctgctggtggtggac
gaggcgtcgatggtcgacctcgaaatgatgtccgcgctgctcggcgcgctgccggccaag
gcgcggctgatcctgctcggcgacaaggaccagctggcctcggtggaagccggtgcggtg
ctcggcgagctgtgcagccgggcgcgcgaagggcattaccagggcgcgacgcgcgactgg
ctggagcaggtcagcggcgagcgcatcgacgacgcgctgctcgacgcccagggcctcgcg
ctcgaccaggcggtggccatgctccgccacagccatcgcttcagctcggccagtggcatt
ggccagctcgccgaggcggtcaatgccggtgatgtggaggccagccgcacggtctgggaa
cgcggctacgccgatctcgcgcggctggcgctcgacgccaaggacgcgcgcagcctgcgc
gagctggtggtggacggcggcggacgtttcttcctgaacgctgcgggccgcgaaggcgtg
gcgccgccgcaaggctatcggcattacctgcaactgctgcgcgacggccagccaccactg
cacgccgggcaggatgcattcgacacctgggcccagcgcgtgctcgaagcccacggccag
ttccaggtgctctgcgccctgcgtcgcggtccctggggcgtggaagggctgaacctgcgc
atcgccgagctgctgcagggggaggggctgatccaggcgagcggcccctggtacctcggt
cgcccgctgctggtgacgcgcaacgactacggcctgggcctgatgaacggcgacatcggc
atcaccctggccctgccgcgcgagcaggacggcgagctgaaatgggcgctgcgggtagcc
ttcgccgacggcaagggcggcatcaagtgggtgttgcccagccgcctgcaggcggtggaa
accgtgttcgccatgaccgtgcacaagtcccagggctcggagttcacccacgccgccctg
gtgctgcccgacgcgctcaaccccatcctcacccgcgagctggtctacaccggcatcacc
cgcgcgcgcagctggttcagcctggccagcgccgggcgcggccagtgggtgctggagtcg
gcgatccagcgccgggtgcagcgggccagcggattgttggaagcgggggactga
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