Pseudomonas knackmussii: PKB_4456
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Entry
PKB_4456 CDS
T03081
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PKB_4456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkc03400
]
PKB_4456
Enzymes [BR:
pkc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PKB_4456
DNA repair and recombination proteins [BR:
pkc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PKB_4456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
Motif
Other DBs
NCBI-ProteinID:
CDF85780
UniProt:
A0A024HL52
LinkDB
All DBs
Position
complement(4691289..4694045)
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AA seq
918 aa
AA seq
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MSEALSPGLMVIHGNHPEALRDLLVAWMARYPLAPLESETILVQSNGIAQWLKLALGRDV
ADGGCGITAALDVQLPAQFLWQAYRGALGKEAVPEVSVLDKAPLTWRLMRLLPTLLEREE
FHALRRFLADDADLRKRYQLAERLADLFDQYQVYRADWLEDWSEGRDQLRTASGGLRDLD
ADERWQAALWRALLEEVGEDGLAGSRAGVHRRFLERLREGAPPKGLPRRVVVFGISAMPA
QTVEALAALSQVAQVLLCVHNPCRHHWADIVADKDLLRHEYRRQQRRPGVPLQLDDDLQH
QYAQPLLAAWGKQGRDYINLLDQYDDPASYRNRFGEVSGGRIDLFSEEQPAHLLGQLQDD
ILELRPLAESRAHWPAVDPARDRSVRFHLAHSAQREVEVLHDQLLARFDADPTLRPRDVI
VMLPDVDAYAPHIQAVFGQLGRDDRRFIPYTLADQGQRGREPLLVALEHLLQLPDSRFAV
SEILDLLDVGALRARFGIHEVDLPLLRRWIDGAGVRWGLDGEQRETLGLPAAAEANTWRF
GLRRMLLGFAVGEGEAFQGIQPYSEIGGLDAAVLGPLANLLQRLADTCESLAEPATPQDW
SKRLQKLLGDFFLTRDEHDELLRQQLLQLLERWLETCGHAAFAEPLPLSVVREAWLGGLD
GGGLNQRFLAGAVSFCTLMPMRAIPFRLVCLLGMNDGDYPRQQPPLDFDLMRNDYRPGDR
SRREDDRYLLLEAVLSARDQLYVSWVGKSIRDNSERAPSVLIGQLRDHLAAGWSLPGQAG
DGQALLHALTTEHPLQPFSRRYFEQAGGGIDGLYRHRRSLHLRPRVARSASRRSARRTGR
GALVRIPAGHAHRPARAGRLPRQPGQRLLPAAPQGALRRRGPDRPRRGSLRPRRPADLAT
AVRTLRAAAPLGRKRMGG
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagccctgagccccggcctgatggtcatccatggcaaccacccggaggcgctg
cgcgacctgctggtggcctggatggcgcgttacccgctggcgccgctggaaagcgagacc
atcctggtgcagagcaacggcatcgcccagtggctgaagctggcgctgggccgcgatgtt
gccgacggtggctgtggcatcaccgccgcgctcgacgtgcaattgcccgcgcagttcctc
tggcaggcctatcgcggcgcgctgggcaaggaggcggtgcccgaggtttcggtgctggac
aaggcgccgctcacctggcgcctcatgcgcctgctgccgaccctgctggagcgcgaggaa
ttccacgccctgcgccgcttcctcgccgacgacgccgacctgcgcaagcgctatcagctg
gccgagcgcctggccgacctgttcgaccagtaccaggtctaccgcgccgactggctggaa
gactggagcgaaggccgcgaccagctgcgcaccgccagcggcggcctgcgtgatctggat
gccgacgagcgctggcaagccgcgctatggcgcgcgctgctcgaagaagtcggtgaagac
ggcctggccggcagccgcgccggggtgcatcggcgcttcctcgaacgcctgcgcgaaggc
gcgccgcccaaggggttgccgcgccgcgtggtggtgttcggcatctccgccatgccggcg
cagaccgtcgaggcgctggccgccttgtcgcaagtcgcgcaggtgctgctctgcgtgcac
aacccctgccgccaccactgggccgacatcgttgccgacaaggacctgctgcgccacgag
taccgccgccagcagcgccgccccggcgtgccgctacaactcgacgacgacctgcaacac
cagtacgcccagccgctgctggccgcctggggcaagcagggccgcgactacatcaacctg
ctcgaccagtacgacgacccggcgagctaccgcaaccgcttcggcgaagtcagcggcggg
cgcatcgacctgttcagcgaggaacagcccgcgcacctgctcggccagctgcaggacgac
atcctcgaactgcgtcctctggctgagagtcgcgcacactggccggcggtcgatccagct
cgggaccgctccgtgcgcttccacctggcgcacagcgcgcaacgtgaagtggaggtactg
cacgaccagttgctggcgcgcttcgatgccgacccgacgctgcgcccgcgcgacgtcatc
gtcatgctccccgacgtcgatgcctatgcgccgcacatccaggcggtgttcggccagctc
ggccgcgacgatcgccgcttcattccctacaccctggccgaccagggccagcgtggccgc
gagcccttgctggtggcgctcgaacacttgctgcagctgcccgacagccgcttcgcggtg
agcgagatcctcgacctgctcgacgtcggcgccctgcgtgcgcgcttcggcattcacgag
gtcgacctgccgctgttgcgccgctggatcgacggcgccggcgtgcgctggggcctggat
ggcgagcagcgggaaaccctcggcctgcccgcggccgccgaagccaacacctggcgtttc
ggcctgcgccgcatgctgctcggctttgcggtgggcgagggcgaggccttccagggtatc
cagccttactcggagatcggcggcctcgatgcggcggtgctcggcccgctggccaacctg
ctgcaacgcctggccgacacctgcgaaagcctcgctgaaccggccacgccgcaggactgg
tcgaagcgcctgcagaagctgctgggcgacttcttcctgacccgcgacgagcatgacgaa
ctgctccgccagcaactcctgcaactgctcgagcgctggctggaaacctgcggccacgcc
gccttcgccgaaccgctgccactctcggtggtgcgcgaagcctggctcggcggcctcgac
ggcggtggcctgaaccagcgcttcctggcaggcgcggtgagcttctgcaccctgatgccg
atgcgcgccattccgttccgcctggtctgcctgctcggcatgaacgacggcgactacccg
cgccagcaaccgccgctggacttcgacctgatgcgcaacgactaccgccccggcgaccgt
tcgcggcgcgaggacgaccgctacctgctgctcgaagccgtgctctcggcgcgcgaccag
ctgtacgtcagctgggtcggcaagagcatccgcgacaacagcgagcgcgcgccctcggtg
ctgatcggccagctacgcgaccacctggccgccggctggtcgctgcccgggcaagccggc
gacggccaggcgctgctgcatgcgctgaccaccgaacacccgctgcaacccttcagccgc
cgctatttcgaacaggcgggcggaggcatcgacgggctctacaggcatcgacggtctcta
cacctacgcccgcgagtggcgcgaagtgcatcgcgacgaagcgctcgccgaacaggccga
ggcgcccttgtccgaatacctgccggacacgcccatcggcctgcgcgtgctgggcgactt
cctcgccaacccggtcaacgccttcttcctgcagcgcctcaaggtgcgcttcgccgaaga
ggacctgaccggccacgacgaggaagccttcgccctcgacggcctgcagacctggcaact
gcagttcgaactctgcgagcggctgcgcccttgggtcgaaagcgaatgggagggtga
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