Pseudomonas knackmussii: PKB_4819
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Entry
PKB_4819 CDS
T03081
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pkc
Pseudomonas knackmussii
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pkc03016
]
PKB_4819 (rtcB)
Enzymes [BR:
pkc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PKB_4819 (rtcB)
Transfer RNA biogenesis [BR:
pkc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PKB_4819 (rtcB)
Prokaryotic type
tRNA splicing ligases
PKB_4819 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CDF86139
UniProt:
A0A024HND8
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All DBs
Position
5068405..5069625
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AA seq
406 aa
AA seq
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MKANAPTLLEVAGGKPIKLWTQGVPVEDDARKQLMNTARLPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTSLMAADLPDNLHGLRSAIEKAVPHGKTFGRH
DQGAWDDVPAHADQAWKSLAKRFKAITDKYPRLEKTNNRNHLGTLGTGNHFIEVCLDEAD
CVWFMLHSGSRGVGNAIGCLFIELAQADMRQHLANLPDRDLAYFEEGSRHFDDYVEAVGW
AQDFARQNRELMMQAVIAAARKVIRKPFEASLEAVNCHHNYVQREQHFGREVLVTRKGAV
SAQKGQLGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRSMSRTQAKKRFSVEDQVRATA
HVECRKDKDVIDEIPMAYKDIDAVMAAQRDLVEVVHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccaacgcccccaccctgctcgaagtcgccggcggcaagccgatcaagctctgg
acccagggcgtgccggtcgaggacgacgcccgcaagcaactgatgaacaccgcgcgcctg
ccgttcatcttcaagcacctggcggtgatgcccgacgtgcacctgggcaagggctcgacc
atcggcagcgtgatccccacggtcggcgccatcattcctgctgcggtcggcgtcgatatc
ggctgcggcatgatcgccgcgcgcacctcgctgatggctgctgacctgccggacaacctg
cacggcctgcgcagcgctatcgagaaggccgtcccccacggcaagaccttcggccgccac
gaccagggcgcctgggatgacgtgcccgcccatgccgaccaggcctggaagagcctggcg
aagcgcttcaaggcgatcaccgacaagtacccacgcctggaaaagaccaacaaccgcaac
cacctcggcaccctgggcaccggcaaccacttcatcgaggtgtgcctggacgaggccgac
tgcgtctggttcatgctgcacagcggctcgcgcggggtcggcaacgccatcggctgcctg
ttcatcgagctggcccaggccgacatgcgccagcacctggccaacctgccggaccgtgac
ctggcctacttcgaggaaggcagccggcatttcgacgattacgtggaagcggtcggctgg
gcgcaggacttcgcgcggcagaaccgcgaactgatgatgcaggcggtgatcgccgcggcg
cgcaaggtgatccgcaagcccttcgaggccagcctggaagcggtgaactgccaccacaac
tacgtgcaacgcgagcagcatttcggccgcgaagtgctggtcacgcgcaagggcgcagtt
tccgcgcagaaaggccagctcggcatcatccccggctcgatgggggcgaagagtttcatc
gttcgcggcctgggcaacgaggaagccttctgctcctgcagccacggcgcgggtcgcagc
atgagccgcacccaggccaagaagcgcttcagcgtagaggatcaggtgcgcgccaccgcg
catgtcgaatgccgcaaggacaaggacgtgatcgacgagatcccgatggcctacaaggac
atcgatgcggtgatggcggcccagcgcgacctggtggaagtggtgcacacgctgcgccag
gtggtctgcgtcaagggctga
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