Pseudomonas knackmussii: PKB_4964
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Entry
PKB_4964 CDS
T03081
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PKB_4964 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkc03019
]
PKB_4964 (pnp)
03016 Transfer RNA biogenesis [BR:
pkc03016
]
PKB_4964 (pnp)
Enzymes [BR:
pkc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PKB_4964 (pnp)
Messenger RNA biogenesis [BR:
pkc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PKB_4964 (pnp)
Transfer RNA biogenesis [BR:
pkc03016
]
Prokaryotic type
tRNA degradation factors
PKB_4964 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
S1_RRP5
OB_RRP5_4th
S1_2
KH_2
Motif
Other DBs
NCBI-ProteinID:
CDF86279
UniProt:
A0A024HNP2
LinkDB
All DBs
Position
complement(5229243..5231348)
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AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQATGAVLVTMDDVTVLVTVVGAKQADPSKSFFPLSV
HYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTN
KKSDPDIAAMIGTSAALAISGIPFAGPIGAARVGFHPEIGYILNPTYEQLQSSSLDMVVA
GTSDAVLMVESEADELTEDQMLGAVLYAHEEFQAVIRAVAELATEAGKPTWNWSAPAENT
ALINAIREEFGAAISEAYTVTVKQERYAALDALREEVLAKFAGEGEGQYPAAEVKDVFGL
LEYRIVRENIVTGKPRIDGRDTRTVRPLKIEVGVLGKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGERKDAFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGVAAMLPSQD
EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGDKFAVLT
DILGDEDHLGDMDFKVAGTDKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ
VIAQPRAELSENAPTMLMMKIDPDKIRDVIGKGGATIRGICEETKASIDIEDDGSVKIYG
ETKEAAEAAKQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDKRI
DKVTDVLKEGEEVKVLVLDVDNRGRIKLSIKDVAAAEASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaagaaattccagttcggtcagtcgaccgtaaccctcgagactggc
cgcatcgcccgccaggccaccggtgccgtcctggtcaccatggacgacgtcaccgtgctg
gtcaccgtcgtcggtgccaagcaggcagacccgagcaaaagcttcttcccgctctccgtg
cactaccaggagaaaacctacgccgccggccgcatcccgggtggcttcttcaagcgtgaa
ggccgtccttccgagaaggaaaccctgacctcgcgcctgatcgaccgtccgatccgcccg
ctgttccccgaaggtttcatgaacgaagtgcaggtcgtctgcaccgtcgtttcgaccaac
aagaagtccgatccggacatcgctgccatgatcggcacctccgccgctctggcgatctcc
ggcattccgttcgcaggcccgatcggtgccgctcgcgtcggcttccacccggaaatcggc
tacatcctgaacccgacctacgagcaactgcagagctccagcctcgacatggtcgtggcc
ggtacctccgacgccgtgctgatggttgaatccgaagccgacgagctgaccgaagaccag
atgctgggcgccgtgctgtacgcccacgaagagttccaggctgtcatccgcgccgtcgcc
gaactggccaccgaagccggcaagccgacctggaactggagcgctccggcagagaacacc
gccctgatcaacgccatccgggaagagttcggcgctgcgatctccgaggcctacaccgtc
accgtcaagcaggaacgctacgcggccctggacgccctgcgcgaggaagtcctcgccaag
ttcgccggcgaaggcgaaggccagtacccggccgctgaagtcaaagacgtcttcggcctg
ctggaataccgcatcgttcgcgagaacatcgttaccggcaaaccgcgtatcgatggccgc
gacacccgcaccgttcgcccgctgaagatcgaagttggcgtactgggcaagacccacggt
tcggcgctgttcacccgtggcgaaacccaggccctggtcgttgccaccctcggcaccgcc
cgtgacgctcagctgctggacaccctggaaggcgagcgcaaggacgccttcatgctgcac
tacaacttcccgcctttctcggtgggcgagtgcggccgcatgggcagcccgggccgtcgc
gagatcggtcacggccgtctggcccgtcgtggcgttgccgccatgctgccgtcgcaggac
gagttcccctacaccatccgcgtggtatcggagatcaccgaatccaacggttccagctcc
atggcttccgtgtgcggtgcttccctggcgctgatggacgccggtgtgccggtcaaggcg
ccggttgccggtatcgccatgggcctggtgaaggaaggtgacaagttcgccgtcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtcgccggtaccgac
aagggcgttaccgccctgcagatggacatcaagatcaacggcatcaccgaagagatcatg
gagatcgccctgggccaggccctggaagctcgcctgaacatcctcggccagatgaaccag
gtcatcgctcagccgcgcgccgagctgtcggaaaacgccccgaccatgctcatgatgaag
atcgatccggacaagatccgcgacgtcatcggcaagggcggcgccaccatccgtggtatc
tgcgaagagaccaaggcctcgatcgacatcgaggacgatggcagcgtgaagatctacggc
gaaaccaaggaagccgctgaagctgccaagcagcgcgtcctcggcatcaccgccgaagcc
gagatcggcaagatctacgtcggcaaggtcgagcgcatcgtcgacttcggcgccttcgtc
aacatcctgccgggcaaagacggtctggtgcacatctcgcagatcagcgacaagcgcatc
gacaaggtcaccgacgtcctgaaggaaggcgaggaagtcaaagtcctggtgctggacgtg
gacaaccgcggccgcatcaagctgtccatcaaggacgtggccgctgcagaagcctccggc
gtctaa
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