Pseudomonas knackmussii: PKB_5533
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Entry
PKB_5533 CDS
T03081
Name
(GenBank) ATP-dependent DNA helicase domain-containing protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PKB_5533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkc03019
]
PKB_5533
03400 DNA repair and recombination proteins [BR:
pkc03400
]
PKB_5533
Enzymes [BR:
pkc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PKB_5533
Messenger RNA biogenesis [BR:
pkc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PKB_5533
DNA repair and recombination proteins [BR:
pkc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PKB_5533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CDF86843
UniProt:
A0A024HQN8
LinkDB
All DBs
Position
complement(5851443..5853368)
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AA seq
641 aa
AA seq
DB search
MHDTLEPVFGFRQFRPGQEAAVRAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLARHGIAAASIDSAQSREQVAQTMARARSGELKVLMISVERLKNERFR
HFIGEVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQKQFRIPQVLLLTATATPAVIADM
RAKFAIAEQDVVTTGFYRANLNLQVEPVATAAKRARLVDWLGPRVGQPSIVYVTQQKTAE
EIAAHLSERGVPACAYHAGMDHTEREAIQKRFMAGQLNCIVATIAFGMGIDKSDIRNVVH
FDLPKSVENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEREGIRSVLEEIL
QAPNGQWELMLTALSDQSNIRQLPLKTLLVQLELRGIIAPRFAYFAEYRFKNLIEPEALL
NHFEGERRQFVEAILSCSARARTWLTLDFDTLYQRHGAERARVVKALDYFQERGWIELES
KQMTEVYAVLDREFDPQLLGDELYGYFKRHEGSEIARIGAMLALFASDECLSHRLARYFG
DERAPEHCGHCSVCAGRVAHLPEPPALPPLEGQTLQTRCAAFLDKYQGARGASPSADCVT
RFLCGISVPVFPRMRARTLPGYATLEDYPYAQVRAWVEGQL
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacaccctcgaacccgtcttcggtttccgccagttccgccccggccaggaggcg
gcggtcagggccgtgctcgccgggcgctcggcggcggcgatcttccccaccggctccggc
aaatcgctgtgctaccagttgccggcgctgctgctgccgcacctgaccctggtggtctca
cccctgctggcgctgatgcaggaccaactcgccttcctcgcccgccatggcattgctgcc
gccagcatcgactcggcgcagagccgcgagcaggtggcgcagaccatggctcgcgcgcgc
agcggcgagctgaaggtgctgatgatctcggtggagcgccttaagaacgagcgcttccgc
cacttcatcggcgaggtgccgatctccctgctggtggtcgacgaggcgcactgcatctcc
gagtggggccacaacttccgacccgactacctgaagctgccggactaccagaagcagttc
cgcattccccaggtgctgctgctcaccgccaccgcgacgcctgcggtgatcgccgacatg
cgcgccaagttcgccatcgccgagcaggacgtggtcaccactggcttctaccgcgccaac
ctgaacctgcaggtcgagccggtcgccactgcggccaaacgtgcccgcctggtggactgg
ctgggcccgcgcgtgggccagccgagcatcgtctacgtcacccagcagaagaccgctgag
gaaatcgctgcgcacctgtccgagcgtggcgtcccggcctgcgcctaccacgccgggatg
gatcacaccgagcgcgaagcgattcagaagcgcttcatggccggccagctgaactgcatc
gtcgcgaccatcgccttcggcatgggcatcgacaagagcgacatccgcaacgtggtgcac
ttcgacctgcccaagtcggtggagaactacagccaggagatcggccgcgccgggcgcgac
ggccagccctcggactgcctggtgctggcgaaccgcgacagcctcaacgtgctggagaac
ttcgtctacggcgacacgcccgagcgcgaaggcatccgcagcgtgctggaggaaatcctc
caggcgccgaacggccagtgggagctgatgctgacggcgctgtcggaccagtcgaacatc
cgccagctgccgctcaagacgctgctggtgcagctggagctacgcggcatcatcgcgccg
cgtttcgcctatttcgccgaatatcgcttcaagaacctcatcgagcccgaggcgctgctg
aatcacttcgagggtgagcggcggcagttcgtcgaggcgatcctcagctgctcggcgcgc
gcgcggacctggttgaccctggacttcgacaccctctatcaacgccacggcgccgagcgc
gcgcgggtggtgaaggcgctggactacttccaggaacgcggctggatcgagctggaaagc
aagcagatgaccgaggtctacgcggtgctcgaccgcgagttcgacccgcagctgctgggc
gatgagctgtatggctacttcaagcgccatgaaggcagcgagatcgcgcgtattggcgcc
atgttggcgctattcgccagcgacgaatgcctcagccatcgactggcccgctacttcggc
gacgagcgcgcgccggaacattgcggccattgctcggtgtgcgccgggcgcgtggcccat
ctgccggagccgccggccctgccgccgctggaggggcagacgctgcagacccgttgtgcc
gccttcctcgacaagtaccagggcgcgcgcggcgcttcccccagtgccgactgcgtgacg
cgcttcctctgcggcatcagcgtgccggtcttcccacgcatgcgtgcacgcacattgccg
ggttacgcgacgctggaggactacccgtacgcccaggtgcgggcgtgggtggaagggcag
ctctaa
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