Paracoccus kondratievae: F8A10_03705
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Entry
F8A10_03705 CDS
T06245
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pkd
Paracoccus kondratievae
Pathway
pkd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F8A10_03705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkd03019
]
F8A10_03705
03009 Ribosome biogenesis [BR:
pkd03009
]
F8A10_03705
Enzymes [BR:
pkd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F8A10_03705
Messenger RNA biogenesis [BR:
pkd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F8A10_03705
Ribosome biogenesis [BR:
pkd03009
]
Prokaryotic type
rRNA processing factors
F8A10_03705
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QFQ86624
LinkDB
All DBs
Position
1:725348..727912
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AA seq
854 aa
AA seq
DB search
MSKKMLIDATHPEETRVVVVDGTKVEEFDFETVNKRQITGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPAADRQALLEEERQAAVADSDEGEKPRRNGRRRKSAKPA
ATGNGDAVQVSEEIAGMTVLDPSEGETVLVEELPTSGDAGDEPAETAEPAEENASEHSDE
DDGIESVAEEDVAEEIRAPKKPRARRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLS
LAGRYCVLMPNTARGGGISRKITNAADRKKLKEIASELAVPEGAGLIIRTAGSQRTRTEI
RRDYEYLMRLWEQIRDLTFKSIAPAPIYEEGDLIKRTIRDLYSKEIDEVLVEGERGYRTA
KDFMKMIMPSHAKNVKHYSDPMPLYARYQVESYLAGMFNPVVQLKSGGYIVIGVTEALVA
IDVNSGRATKEGSIEETALKTNLEAAEEIARQLRLRDLAGLIVIDFIDMEERKNNAAVEK
RFKERLKTDRARIQVGRISGFGLLEMSRQRLRPGMLESTTQPCPHCHGTGLIRSDDSLAL
TILRAIEEEGTRKRSREVLVKAPVAVANFLMNAKREHIAGIEARYGLSVRVEADPTLISP
DYALEKFKTATRNLPEVVTPVVSVDARLMAQIDGEEPAEETETEEDATEERVDDARAENG
DGDAAGKRRRRRRRRRGGRNGEGDAHHGEDGADDALAEGEDEAEAEVTAEAPDVAEPEPE
VVAEPAPVAEAEEEAKPRRRTRARRRKADEPAEAEAAEVVASADPVTAAPAEEAVAEGAP
AGTVDQAEPAVEPVEAVEPEPTIADEPVNEVTDVEAQPEPALVEEVVTAKPEPAPAPAVE
EASRPKRRGWWSMG
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaaaatgctgatcgacgccacgcatcccgaagagactcgggttgtcgtggtc
gatgggaccaaggtcgaagaatttgatttcgagacagtcaacaagcgacagataaccggc
aatatctatctggccaaggtcacgcgggtcgaaccctcgttgcaggcggcctttgtggat
tacggcggcaaccgccacggctttctcgcctttgccgagatccatcccgattattaccag
atccccgctgccgaccggcaggcgcttctggaagaggagcgtcaggccgctgtggccgac
tctgatgagggcgaaaagccccgccgcaatggccgtcgccgcaaatccgccaaaccagcc
gctaccgggaatggcgatgctgtgcaggtctcggaagagatcgccggcatgaccgtgctg
gacccgtcggagggtgaaaccgttctggtcgaagaactgccgacgagcggtgacgccggc
gacgagcccgccgagacggccgaacccgccgaggaaaacgcgtccgagcacagcgatgag
gatgatggtatcgaatccgtcgccgaagaggacgtggccgaggaaatccgggcccccaaa
aagccgcgcgcccgccgctataagatccaggaggtgatcaaggtccggcagatcatgctg
gtccaggtcgtcaaggaagagcgtggcaacaagggtgctgcgctgaccacctatctgtcg
ctggccggtcgctattgtgtcctgatgccgaataccgcgcgtggtggcgggattagccgc
aaaatcaccaatgctgccgaccgcaagaagcttaaggaaatcgcctcggaactggcggtt
ccagagggggcgggcctcatcatccgcaccgctggcagccagcgcacccgcaccgagatc
cggcgggactatgaatatctgatgcgcctgtgggagcagatccgtgatctgaccttcaag
tccatcgcgcccgccccgatctatgaggaaggcgaccttatcaagcgcacgatccgcgat
ctttatagcaaagagatcgacgaggttctggtcgagggcgagcgtggctatcgcacggcc
aaggacttcatgaagatgatcatgccgtcccacgccaagaacgtgaagcattacagcgat
ccgatgccgctttatgcgcgctatcaggtcgaaagctatctggctggcatgttcaacccg
gtcgtgcagctgaaatcgggtggctatatcgtcatcggcgtgaccgaggcgctggtcgcc
atcgacgtgaactcgggccgcgccaccaaggaaggctcgatcgaggaaaccgcgctcaag
acgaaccttgaggctgccgaggaaatcgcgcggcaactgcggttgcgcgaccttgccggt
ctgatcgtcatcgacttcatcgacatggaagagcgtaagaacaacgctgcggtcgagaaa
cgtttcaaggaacggctcaagaccgaccgggcgcgcattcaggtcgggcgcatctcgggc
tttggtctgcttgagatgtcgcgccagcgcctgcggccaggcatgctggaatcgaccaca
cagccctgtccgcactgccatggcaccggtctgatccgctcggacgacagtctggcgctg
accatcctgcgtgccatcgaggaagagggtacccgtaagcgttcgcgcgaagtgctggtc
aaggcacccgtcgctgtggcgaacttcctgatgaacgccaagcgcgaacatatcgccggg
atcgaggcgcgttatggtctgtccgtgcgggtcgaggccgacccgacgctgatctcgccc
gattacgcgcttgagaaattcaagaccgcaacccgcaacctgcctgaggtggtgacgcct
gttgtctcggtcgatgcacggctgatggcgcagatcgacggcgaagagcccgccgaggaa
acggaaaccgaagaggatgccaccgaagagcgcgtcgatgatgcgcgggccgaaaatggg
gatggcgatgcggctggcaagcgccgccgccgccgccgccgtcgccggggtggccgcaat
ggtgaaggtgatgcccatcacggtgaggacggggctgatgacgccttggccgagggtgaa
gatgaggccgaggcagaggtgaccgccgaagcgccggacgtggcggaacctgagcccgag
gtggtcgctgaacccgcccctgttgctgaggccgaggaggaagccaagccccgtcgccgc
actcgtgcccgccgtcgcaaggctgacgaacctgccgaggctgaggcagccgaggttgtc
gcctctgctgatccggtcaccgccgcgcctgcggaagaggccgtggccgagggcgcgcca
gccgggactgtcgatcaggcagagcctgctgtcgaaccagtcgaggctgtcgagccggag
cccacgatagctgatgagccggtaaacgaggtaaccgatgtcgaggcccagcctgaacca
gcgctggtcgaagaggttgtcacggcaaaacctgaacccgcgcccgcacccgctgtcgag
gaagcgtcccggcccaagcgtcgcggctggtggtcgatgggctga
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