KEGG   Pseudomonas kribbensis: DLD99_02920
Entry
DLD99_02920       CDS       T06348                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
pke  Pseudomonas kribbensis
Pathway
pke02024  Quorum sensing
pke03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pke00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DLD99_02920
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    DLD99_02920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pke03019]
    DLD99_02920
   03036 Chromosome and associated proteins [BR:pke03036]
    DLD99_02920
Messenger RNA biogenesis [BR:pke03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     DLD99_02920
Chromosome and associated proteins [BR:pke03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    DLD99_02920
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AXI59463
UniProt: A0A345RJJ7
LinkDB
Position
635849..636109
AA seq 86 aa
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSATESEAGDAEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacttgaatactttacgtaaagagaaagtt
ggggtttccatctacctggtcaacggtatcaaactgcaaggcacgatcgaatcgttcgac
cagttcgttatcctgctgaagaacaccgtcagccagatggtttacaaacacgctatctct
acagtcgtgccggttcgtccaattcgtctgccaagcgcaaccgaatccgaagcaggtgac
gctgagccaggtaacgcctga

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