Pseudomonas kribbensis: DLD99_02975
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Entry
DLD99_02975 CDS
T06348
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pke
Pseudomonas kribbensis
Pathway
pke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DLD99_02975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pke03019
]
DLD99_02975
03016 Transfer RNA biogenesis [BR:
pke03016
]
DLD99_02975
Enzymes [BR:
pke01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DLD99_02975
Messenger RNA biogenesis [BR:
pke03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DLD99_02975
Transfer RNA biogenesis [BR:
pke03016
]
Prokaryotic type
tRNA degradation factors
DLD99_02975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
TRAM_2
TRAM
SRP-alpha_N
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AXI59472
UniProt:
A0A345RJK6
LinkDB
All DBs
Position
647867..650497
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AA seq
876 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILQHLADRGSPAAREQLVEEFGLTTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANAQIGQFVEVKITHWPTPRFQPQGDVIEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAGKLKPEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCESKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKSGEMTDYCFYEAVIHSHARLTYNKVSAMLETPKATEGRKLRGEYTDVLP
HLKQLYALYKVLLAARHVRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLA
SIKDRPDFHLIQTVMLRSLSQAVYSAQNEGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQDTPHVRRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTISAPIGRKKRGTETAAPAAKAVEEKAPAK
TASRRPAKEKVVEAYRPSDAVAKNAELRKSREMKKALLADAKNGGKAASGGKTGRSAPEK
ASGSKPGKPSKHRKGPPKAGSAPAKSGGARKPKAKS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcccagccgcgaactgatccttcagcaccttgctgatcggggttcgcctgctgcc
cgcgagcaactggtcgaagaatttggtctgaccacagaagaccagatcgaagccctgcgc
cgccgtctgcgcgccatggagcgcgacgctcaactgatctacacccgccgtggcacttat
gcgccggtggacaagctcgacctgatcctcggccgcatcagcggtcaccgcgacggcttc
ggcttcctggtgccggatgacggttccgatgacctgttcatgagcccggcgcaaatgcgt
ctggtgttcgacggtgaccgtgctttggcccgcgtttccggcctggaccgtcgcggtcgc
cgcgaaggcgtgatcgtcgaagtggtgtcccgtgcccacgaaagcatcgtcggccgttac
ttcgaagaaggcggtatcggcttcgtggtcgcggacaacccgaagatccagcaggaagtg
ctggtgaccccgggccgcaacgccaacgctcagatcggtcagttcgtcgaggtgaaaatc
acccactggccgactccgcgcttccagccgcaaggcgatgtgatcgaagtcgtcggcaac
tacatggcgccgggcatggaaatcgatgtcgccctgcgcacctacgacattccgcacgtc
tggcctgaagccgttctgaaggaagccggcaagctcaagccggaagtcgaagagaaagac
aaagagaaacgcgtcgacctgcgccatctgccgttcgtcaccatcgacggtgaagatgcc
cgcgacttcgacgacgcggtctactgcgaatccaagccaggcaagttgcgtctgttctcc
ggcggctggaagttgtacgtggcgattgccgacgtttccagctacgtgaagatcggctcg
gccctggacaacgaagcccaggtacgtggcaactcggtgtacttccccgagcgtgtggtg
ccgatgctgccggagcagctctccaacggcctgtgctcgctgaacccgcacgtcgatcgt
ctggccatggtttgcgagatgaccatctccaagtccggcgaaatgaccgactactgcttc
tatgaggcagtgatccactcccacgcccgcctgacctacaacaaggtcagcgcgatgctg
gaaacgccgaaagccaccgaagggcgcaagcttcgcggcgaatacaccgacgttctgccg
cacctgaagcagctctacgcgctgtacaaagtgttgctggccgcccgtcacgtgcgtggc
gcgatcgatttcgaaacgcaggaaacccggatcatcttcggttccgagcgcaagattgcc
gaaatccgtccgaccacccgtaacgacgcccataagctgatcgaggaatgcatgctggcg
gccaacgtggccaccgccgagttcctgaaaaagcacgaaatccctgcgctgtaccgcgtc
cacgacggtccgccaccggagcgtctggaaaaactgcgtgcgttcctcggcgagctcggc
ctgtccctgcataaaggcaaggacggcccgacgccgaaggactaccaggcactgctggcc
agcatcaaggaccgtccggatttccacctgatccagaccgtgatgctgcgctccctgagc
caggcggtgtacagcgcccagaacgaaggccacttcggcctgaactacgaagcctatacc
cactttacttcgccgatccgtcgttacccggacctgctcacgcaccgggcgatccgcagc
gtgatccattcgaaacaggacaccccgcacgttcgccgtgccggtgcgatgaccattccg
aaggcgcgcatctatccgtacgacgaagcggccctggagcaactcggcgagcagtgctcg
atgagcgagcgccgtgccgacgaagcgacccgcgacgtggtgaactggctcaagtgcgag
ttcatgaaagaccgcgtgggcgaatcgttcccgggcgtgatcactgccgtgaccggtttt
ggcctgttcgtcgaactgaccgatatctacgtcgaaggtctggtgcacgtgacggcgctg
ccgggcgattactaccacttcgatcctgtacaccaccgcctggcgggcgagcgcaccggt
cgcagcttccgtcttggcgataccgttgaagtgcgcgtcatgcgcgtcgatctcgacgag
cgcaagatcgacttcgagatggccgagaaaaccatcagcgcaccaatcggccgcaagaag
cgtggcaccgaaaccgctgctccagcggccaaggctgtggaagaaaaggctccggccaaa
accgccagccgtcgtccggccaaggaaaaggtcgtcgaggcttatcgcccaagcgatgcc
gtggcgaaaaacgccgagctgcgcaaaagccgtgagatgaagaaggccttgctggccgac
gccaaaaacggtggtaaagcggcgtccgggggaaagaccggacggtcggcgcctgaaaag
gcctccggcagcaagccaggcaaaccgagcaaacaccgcaagggaccgccaaaagcgggt
tccgctccagccaaaagcggcggggcacgtaaaccgaaggcgaagtcatga
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