Pseudomonas kribbensis: DLD99_05540
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Entry
DLD99_05540 CDS
T06348
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pke
Pseudomonas kribbensis
Pathway
pke03410
Base excision repair
pke03430
Mismatch repair
pke03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DLD99_05540 (recJ)
03430 Mismatch repair
DLD99_05540 (recJ)
03440 Homologous recombination
DLD99_05540 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pke03400
]
DLD99_05540 (recJ)
DNA repair and recombination proteins [BR:
pke03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DLD99_05540 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DLD99_05540 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DLD99_05540 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AXI59955
UniProt:
A0A345RKY9
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All DBs
Position
1220826..1222535
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AA seq
569 aa
AA seq
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MRIDPRPLPATLPFLGELPPLLTRLYAARGVQSEAELDKSLARLIPFQQLKGIDAAVDLL
VTALEQRQRILIVGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEV
AMTREPQLLITVDNGISSVEGVAAAKRHGLKVLITDHHLPGDELPQADALVNPNQPGCEF
PSKALAGVGVIFYVLMALRARLRSLGWYESKTQPNIGELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGIKAILEVAKRDASRITSTDLGFIVGPRLNAAGRLDDMSLGIEC
LLTHDAALAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVESMPFGLCLFDPEWHQG
VIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVQGFHIRDALSVVAAQHPDLIAKYGG
HAMAAGLTLPQENFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHA
GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKTECGSVKLDGIAFGIDRDIWPNPTIK
WVELAYKLDLNEFRGNETVQLMIAHIEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgatcctcgcccgttgcccgccactctgccgtttctcggtgaactgccaccc
ctgctgacccgcctgtacgcggcgcggggcgtgcagtccgaggcggagctggacaagagc
ctggcgcggttgattccgttccagcagctcaaggggatcgatgcggcggtggacctgctg
gtgacggcgctggagcagcgtcaacggattctgattgtcggtgacttcgacgccgacggc
gcgacggccagcaccgtgggcgtgcttggcttgcgcctgctgggcgcggcgcacgtcgat
tatctggtgccgaaccgctttgaatacggctatggtctgaccccggaaatcgtcgaagtc
gcgatgacccgcgagccgcaactgttgatcaccgtcgacaacggcatttccagcgtcgaa
ggtgtggcggccgcgaaacgtcacggcctgaaggtcttgatcaccgaccaccacttgccc
ggcgatgagctgccgcaggccgatgcgctggtcaacccgaaccagcctggctgcgagttt
ccgagcaaggcactggccggtgtcggggtgatcttctatgtgttgatggcgttgcgtgcg
cgtctgcgcagcctcggctggtacgagagcaagacacagccgaacattggcgaactgctg
gatctggtggcgctgggcagcgttgccgacgtggtgccgctggatgccaacaaccggatt
ctggtgcaccagggcctggagcggattcgcgccgggcgtgcgcggccggggatcaaggcg
attcttgaagtggccaagcgtgatgcctcacgcatcacgtccaccgacctcggcttcatc
gtcggcccgcgcctgaacgcggcggggcgtctggatgacatgagcctgggcatcgaatgc
ctgctgacccacgacgctgcgttggcccgggaaatggccgcgcaactggacggcatgaac
caggatcgcaaatccattgagcagggcatgcagcgcgaggcgctggcccagctcaaggac
ttgccggtcgagtcgatgccgttcggtctttgcctgttcgatccggaatggcaccagggt
gtgatcggtattctggcttcgcggatgaaagagcgatatttccgcccgaccatcgccttt
gccgacgctggcgacggtttgctcaagggctcggggcgttcggtgcagggtttccatatt
cgcgatgcgctgagcgtggtcgcggcgcagcatccggatctgatcgccaagtacggcggc
cacgcgatggcggccggcctgaccttgccgcaggagaattttccgttgttcgccgaggcc
ttcgacgccgaggtgcgcaggcagcttcgcgaagaagatctgaccgggcgcctgctgtcg
gacggcaccttggctgttgaagaatttcatctggagctggcccgcgccctgcgccatgcc
gggccgtgggggcagcattttccggagccgctgtttcatggcgtgttccagttggtcgag
cagcgagtggtcggcgagcggcacctgaaagtggtgctgaaaaccgaatgcggttcggtg
aagctcgacggcatcgcgttcggcatcgatcgcgatatctggccgaacccgacgatcaaa
tgggttgaactggcctacaaacttgatctcaacgaatttcgcggcaatgaaaccgtgcaa
ttgatgattgcccacatcgaaccgcgttga
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