Pseudomonas kribbensis: DLD99_11245
Help
Entry
DLD99_11245 CDS
T06348
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pke
Pseudomonas kribbensis
Brite
KEGG Orthology (KO) [BR:
pke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pke03016
]
DLD99_11245 (thpR)
Enzymes [BR:
pke01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
DLD99_11245 (thpR)
Transfer RNA biogenesis [BR:
pke03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
DLD99_11245 (thpR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Acb1
Motif
Other DBs
NCBI-ProteinID:
AXI61022
UniProt:
A0A345RP06
LinkDB
All DBs
Position
2428867..2429406
Genome browser
AA seq
179 aa
AA seq
DB search
MTDETRGDQPFKRLFFALDCPPAQRKAIAQWRSELGLRTGKPVPADNFHLTLLFLGAVPL
AQIAEVCEAAAKVRTPGEALRISLDRLQVWHRAGVLSLAPEQAPAGLLRLVYGLEQAMLP
FGFEEATREYRPHLTLARDYRAPEPESATPPEFFLRAERFALFESHKGRYRIVQDWPLT
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
gtgacggacgaaacacgcggggatcaaccgttcaagcggctgttcttcgccctggactgc
ccaccggcacagcgcaaggcgattgcccagtggcgcagcgaactgggactgcgtaccggc
aaaccggtgccggcggacaactttcacctgacgctgctgtttctcggcgcagtgccgttg
gcgcagattgctgaagtctgtgaggcggccgcgaaagtgcgcacgccgggcgaggcgctg
aggatttcgctggaccggttgcaggtctggcatcgcgccggggtgttgtcgctggcgccg
gaacaggcacctgcgggtttgttgcggctggtttatggattggagcaggcgatgttgccg
ttcggttttgaagaggcgacgcgtgagtaccgtccacacctgacgctggcccgggactat
cgcgctccggagccggaatctgcgacgccgccggagttcttcttgcgggccgaacgcttt
gcgctgttcgaatcccacaagggtcgttatcgaattgttcaggattggccgctgacctga
DBGET
integrated database retrieval system
