KEGG   Pseudomonas kribbensis: DLD99_18995
Entry
DLD99_18995       CDS       T06348                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pke  Pseudomonas kribbensis
Pathway
pke02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pke00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    DLD99_18995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pke03021]
    DLD99_18995
Transcription machinery [BR:pke03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     DLD99_18995
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_23 HTH_24 GerE HTH_20 HTH_11 HTH_38 PhyR_sigma-like TnsD HTH_Tnp_4 AlcCBM31 HTH_7
Other DBs
NCBI-ProteinID: AXI62474
UniProt: A0A345RT58
LinkDB
Position
4181516..4182022
AA seq 168 aa
MSPFDPPLNQQVQTLYSEHHGWLQGWLQRKLGNRCDAADLAHDTFLRLLSRQVVKPLGNE
PRALLTHIAKGLVIDRWRRQDIERAYLETIASLPVAEVPSPETRYLILETLWRIEALLRE
LPAQTRDTFLLSQIEGLTYAQIATRLNVSLITVKRHMRAAFIACLSVA
NT seq 507 nt   +upstreamnt  +downstreamnt
atgtcgccttttgatccgccattgaatcagcaagtccagacgctctacagcgaacaccac
gggtggctgcagggctggctgcagcgcaagctgggcaatcgctgcgatgcggccgacctt
gcacacgatacgtttttacgcctgctcagccgtcaggtggtcaaaccgctgggcaacgaa
ccccgggcgctgctgacgcacattgccaaaggtctggtgatcgaccgctggcggcgtcag
gacatcgagcgcgcctacctggaaaccatcgccagcctgcccgtcgccgaggtgccgtcg
ccggaaacccgctacctgattctcgaaaccctttggcgcatcgaagccctgctgcgtgag
ttgccggcgcagacccgcgacaccttcctgctgtcgcagatcgaaggcctgacctacgcg
cagatcgccacacgcctgaatgtttcgctgattaccgtcaaacgccacatgcgcgccgcg
ttcattgcctgcctgagtgtcgcctga

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