Pseudomonas kribbensis: DLD99_19360
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Entry
DLD99_19360 CDS
T06348
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pke
Pseudomonas kribbensis
Brite
KEGG Orthology (KO) [BR:
pke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pke03032
]
DLD99_19360 (topA)
03400 DNA repair and recombination proteins [BR:
pke03400
]
DLD99_19360 (topA)
Enzymes [BR:
pke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DLD99_19360 (topA)
DNA replication proteins [BR:
pke03032
]
Prokaryotic type
DNA Topoisomerases
DLD99_19360 (topA)
DNA repair and recombination proteins [BR:
pke03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DLD99_19360 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AXI62545
UniProt:
A0A345RTC9
LinkDB
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Position
complement(4256466..4259096)
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AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSEPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTTKGST
VRFEVAREKGEAFKPLNEAQAMAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVAMARTYIEDEFGKKYLPETPN
VYSSKEGAQEAHEAIRPSDANTTPSKLAGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVAAGDFELRAKGRILKFDGYTRVLPQITKPGDDDVLPDMAQGDVMKLIKLDPTQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAENPEAGMRANQPVMT
DIPCTTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEILPHKDEIDPKYHFLCEAPQKDPDGLPAVIRYSRKTK
EQYVQTEVDGKPTGWKAFFDGGKWTVEDKRPAKAKA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggcaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagcctgccgccaagcgtggcaaggcagctgcgggcgaa
gcgccagcgctgtcgccgaaagagaaggcgcgcaagcagttggtctcgcgcatgggtgtc
gatccggatcatggctggaaggccaagtacgagatcctcccgggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaggatgctgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggtggtgacgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaagcgattcaggaagccttctcggag
ccgggcgagctcgatatcgatcgagtgaacgcgcagcaggcccgtcgtttcctcgaccgc
gtcgtcggttacatggtctcgccgctgctgtgggccaagatcgcccgtggtctgtccgcc
ggtcgtgtgcaatcggtggccgtgaagctggtggtcgagcgtgagcgtgaaattcgtgcg
ttcattccggaagagtactgggaagtgcatgccgacctcggcaccaccaagggctcgacc
gttcgtttcgaagtggcgcgtgaaaagggcgaagctttcaagccgctcaacgaagcgcag
gccatggcggcgctggagaagctgaagtcttccagctacagcatcgtcaagcgtgaagac
aagccgaccagcagcaagccgtcggcgccgttcatcacctccacgctgcaacaggctgcg
agcaatcgcctgggcttcggcgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacctatatgcgtactgactcgaccaacctctcggctgatgccgtggcg
atggcgcgtacttatatcgaagacgagttcggcaagaagtacctgccggaaacgccgaac
gtctacagcagcaaggaaggcgcacaggaggctcacgaagcgattcgtccttccgacgcc
aacactacgccaagcaagctcgctggcatggagcgtgacgctgagcgcctctatgagctg
atctggcgccagttcctggcttgccagatgctgccggcgcaatatctgtcgacgaccgtc
agcgtggccgctggcgacttcgagctgcgtgccaagggccgtatcctgaagttcgacggc
tacactcgcgttctgccgcaaatcaccaagcctggcgatgacgatgttctgccggacatg
gcgcagggcgacgtgatgaagttgatcaagcttgatccgacccagcatttcaccaagccg
ccggcccgttactcggaagccagcctggtgaaggaaatggaaaagcgtggcattggccgt
ccttcgacctacgcggcgatcatttcgaccattcaggatcgcggctacgtgaccctgcac
aaccgtcgtttctattcggaaaagatgggcgacattgtcaccgagcgtctgtcggagagc
ttctcgaacctcatggactacggcttcaccgccggcatggaagagaacctcgatgacgtg
gctcagggtgaacgtgactggaagaacgtgcttgacgagttctacggtgacttcaagaaa
aaacttgaagtagccgaaaacccggaagccggcatgcgtgccaaccagccggtgatgacc
gatattccgtgcaccacttgcggccgtccaatgcagattcgtactgcgtcgaccggcgtg
ttcctcggttgctcgggctacagcctgccgccgaaagagcgctgcaaggccaccgtcaac
ctggtgccgggcgacgaaatcgcagcggacgatgaaggcgagtcggaatccctggtgctg
cgcggcaagcatcgttgcccgatctgcagcaccgcgatggacgcctacctgctcgatgaa
aagcgcaagctgcacatctgcggtaacaacccggattgcgccggctacgaaatcgaagaa
ggcagctaccgcatcaagggctatgaaggtccaagcctggagtgcgacaagtgcggcagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaatccgacttgc
aagaacacccgcaagctgctgaagagcggtgatgcggcgcctccgaagatggatccggtg
aagatgcctgagctgaaatgcgaaaaggtcaacgacacttatatcctgcgcgatggtgct
tcaggcctattcctggcggccagccagttcccgaaaaaccgcgagacccgtgctccgctg
gtgatcgagattctgccgcacaaggacgagatcgatccgaagtaccacttcctgtgcgaa
gcgccgcagaaggacccagatggtctgcctgcagtgatccgttacagccgcaagaccaag
gagcaatacgtccagaccgaagttgacggcaagccaacaggctggaaagcgttcttcgac
ggtggcaagtggacagttgaagacaagcgtccggcaaaagccaaggcttga
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